miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29048 3' -59.6 NC_006146.1 + 87153 1.12 0.000988
Target:  5'- gGCCACCCACUGCUCACGGCCCACAGGg -3'
miRNA:   3'- -CGGUGGGUGACGAGUGCCGGGUGUCC- -5'
29048 3' -59.6 NC_006146.1 + 118262 0.69 0.595696
Target:  5'- gGCCagaGCCCA-UGUUCuCGGCCCGgucCAGGa -3'
miRNA:   3'- -CGG---UGGGUgACGAGuGCCGGGU---GUCC- -5'
29048 3' -59.6 NC_006146.1 + 61518 0.69 0.605538
Target:  5'- uGCCGCCCugUcaUUCAgaaaccUGGCCUACGGGc -3'
miRNA:   3'- -CGGUGGGugAc-GAGU------GCCGGGUGUCC- -5'
29048 3' -59.6 NC_006146.1 + 55953 0.66 0.813506
Target:  5'- uGCCcCCCGCca-UCGCcGCCCAgGGGu -3'
miRNA:   3'- -CGGuGGGUGacgAGUGcCGGGUgUCC- -5'
29048 3' -59.6 NC_006146.1 + 52946 0.74 0.340102
Target:  5'- cGCCGCCUaucccguuACcGUUCAUGGCCCuccGCGGGg -3'
miRNA:   3'- -CGGUGGG--------UGaCGAGUGCCGGG---UGUCC- -5'
29048 3' -59.6 NC_006146.1 + 126349 0.72 0.436564
Target:  5'- aGCCACCCGgaGCcC-CGGCCCcuuuucCAGGa -3'
miRNA:   3'- -CGGUGGGUgaCGaGuGCCGGGu-----GUCC- -5'
29048 3' -59.6 NC_006146.1 + 159270 0.71 0.489408
Target:  5'- cGCCGCCaCGCggGcCUCGgGGCCCucgcagucggcaaACAGGg -3'
miRNA:   3'- -CGGUGG-GUGa-C-GAGUgCCGGG-------------UGUCC- -5'
29048 3' -59.6 NC_006146.1 + 15130 0.71 0.499594
Target:  5'- aGCCACCCAU--CUCAgGGCCCcuuCGGa -3'
miRNA:   3'- -CGGUGGGUGacGAGUgCCGGGu--GUCc -5'
29048 3' -59.6 NC_006146.1 + 24364 0.71 0.499594
Target:  5'- aGCCACCCAU--CUCAgGGCCCcuuCGGa -3'
miRNA:   3'- -CGGUGGGUGacGAGUgCCGGGu--GUCc -5'
29048 3' -59.6 NC_006146.1 + 127643 0.7 0.580002
Target:  5'- gGCCGCCCugUGcCUCuCGGUgggcuaucugcugcuCCAgGGGg -3'
miRNA:   3'- -CGGUGGGugAC-GAGuGCCG---------------GGUgUCC- -5'
29048 3' -59.6 NC_006146.1 + 94003 0.71 0.499594
Target:  5'- gGUCACCUcugGCUCccacguGCGGCCCgGCAGGg -3'
miRNA:   3'- -CGGUGGGugaCGAG------UGCCGGG-UGUCC- -5'
29048 3' -59.6 NC_006146.1 + 21286 0.71 0.499594
Target:  5'- aGCCACCCAU--CUCAgGGCCCcuuCGGa -3'
miRNA:   3'- -CGGUGGGUGacGAGUgCCGGGu--GUCc -5'
29048 3' -59.6 NC_006146.1 + 143570 0.76 0.272241
Target:  5'- cGCCACCCGCUGUUUuuggAgGGCCaguugaaGCAGGc -3'
miRNA:   3'- -CGGUGGGUGACGAG----UgCCGGg------UGUCC- -5'
29048 3' -59.6 NC_006146.1 + 134140 0.7 0.566342
Target:  5'- gGCCACCCcCUua-CGCGGCCUGCGGa -3'
miRNA:   3'- -CGGUGGGuGAcgaGUGCCGGGUGUCc -5'
29048 3' -59.6 NC_006146.1 + 117907 0.76 0.278508
Target:  5'- aCC-CCCGCgGC-CACGGCCgGCAGGu -3'
miRNA:   3'- cGGuGGGUGaCGaGUGCCGGgUGUCC- -5'
29048 3' -59.6 NC_006146.1 + 18208 0.71 0.499594
Target:  5'- aGCCACCCAU--CUCAgGGCCCcuuCGGa -3'
miRNA:   3'- -CGGUGGGUGacGAGUgCCGGGu--GUCc -5'
29048 3' -59.6 NC_006146.1 + 31322 0.7 0.576091
Target:  5'- cGCCcCCCGCaGcCUCAUugGGCUUACAGGc -3'
miRNA:   3'- -CGGuGGGUGaC-GAGUG--CCGGGUGUCC- -5'
29048 3' -59.6 NC_006146.1 + 43337 0.69 0.605538
Target:  5'- gGCCGCCCAggGCcagcaggCGCaGCCCgugGCAGGg -3'
miRNA:   3'- -CGGUGGGUgaCGa------GUGcCGGG---UGUCC- -5'
29048 3' -59.6 NC_006146.1 + 41577 0.75 0.325603
Target:  5'- gGCCGCCUACUgGCUgGCcgaggcggagaGGCCCGgGGGg -3'
miRNA:   3'- -CGGUGGGUGA-CGAgUG-----------CCGGGUgUCC- -5'
29048 3' -59.6 NC_006146.1 + 101481 0.71 0.481147
Target:  5'- cCCAUCCugUGCUCgguGGCCCugcucguCAGGa -3'
miRNA:   3'- cGGUGGGugACGAGug-CCGGGu------GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.