miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29048 5' -56 NC_006146.1 + 50417 0.67 0.860699
Target:  5'- cUCC-ACGGGCaGga-AGCAGCGCAGc -3'
miRNA:   3'- cAGGaUGUCCGaCacgUCGUCGUGUC- -5'
29048 5' -56 NC_006146.1 + 61405 0.67 0.84479
Target:  5'- uGUCC--CAGGCUGgcUGCGGUGGCcaacGCGGg -3'
miRNA:   3'- -CAGGauGUCCGAC--ACGUCGUCG----UGUC- -5'
29048 5' -56 NC_006146.1 + 80061 0.67 0.828086
Target:  5'- cGUCCUAgAGGC-GUaaGGCGGCACu- -3'
miRNA:   3'- -CAGGAUgUCCGaCAcgUCGUCGUGuc -5'
29048 5' -56 NC_006146.1 + 123916 0.67 0.826374
Target:  5'- gGUCCgACGGGCgcaauuccugGCGGCGGC-CGGg -3'
miRNA:   3'- -CAGGaUGUCCGaca-------CGUCGUCGuGUC- -5'
29048 5' -56 NC_006146.1 + 129513 0.68 0.819455
Target:  5'- -gUCUGCGGGUUcGUGgAGCGGC-CGGa -3'
miRNA:   3'- caGGAUGUCCGA-CACgUCGUCGuGUC- -5'
29048 5' -56 NC_006146.1 + 42917 0.68 0.819455
Target:  5'- uGUCCc---GGCUGUcaGCAGCGGCGCc- -3'
miRNA:   3'- -CAGGauguCCGACA--CGUCGUCGUGuc -5'
29048 5' -56 NC_006146.1 + 64168 0.68 0.81065
Target:  5'- aGUCUgcCAGGCUGggugGgGGCAGCAgGa -3'
miRNA:   3'- -CAGGauGUCCGACa---CgUCGUCGUgUc -5'
29048 5' -56 NC_006146.1 + 128145 0.68 0.81065
Target:  5'- aUCCaACucguAGGCcgcguUGUGCGGCAGCACc- -3'
miRNA:   3'- cAGGaUG----UCCG-----ACACGUCGUCGUGuc -5'
29048 5' -56 NC_006146.1 + 124128 0.69 0.754633
Target:  5'- ----gACGuGGCUGUGCGGUGGCGCGu -3'
miRNA:   3'- caggaUGU-CCGACACGUCGUCGUGUc -5'
29048 5' -56 NC_006146.1 + 132783 0.69 0.734971
Target:  5'- gGUCgCUGCAGGCUcgcagcUGCucAGCAGCuGCAGg -3'
miRNA:   3'- -CAG-GAUGUCCGAc-----ACG--UCGUCG-UGUC- -5'
29048 5' -56 NC_006146.1 + 166515 0.69 0.734971
Target:  5'- aGUCggGC-GGCUGUGCcaAGCGGCAgGGu -3'
miRNA:   3'- -CAGgaUGuCCGACACG--UCGUCGUgUC- -5'
29048 5' -56 NC_006146.1 + 38802 0.7 0.684376
Target:  5'- aGUCCUGCGGG--GUGCAcaucuGCAGC-CAGg -3'
miRNA:   3'- -CAGGAUGUCCgaCACGU-----CGUCGuGUC- -5'
29048 5' -56 NC_006146.1 + 165414 0.7 0.684376
Target:  5'- -aCCguaaacCAGGCcagGUGCAGCAGgACAGc -3'
miRNA:   3'- caGGau----GUCCGa--CACGUCGUCgUGUC- -5'
29048 5' -56 NC_006146.1 + 51191 0.7 0.684376
Target:  5'- -gUCUGCGGGCUG-GC-GUGGUACAGg -3'
miRNA:   3'- caGGAUGUCCGACaCGuCGUCGUGUC- -5'
29048 5' -56 NC_006146.1 + 83694 0.7 0.663761
Target:  5'- uUCCaGCAGuCUGUGCuGCuGCACAGc -3'
miRNA:   3'- cAGGaUGUCcGACACGuCGuCGUGUC- -5'
29048 5' -56 NC_006146.1 + 10689 0.7 0.663761
Target:  5'- -aCCcGCGGGCaucaUGCAgGCAGCACAGa -3'
miRNA:   3'- caGGaUGUCCGac--ACGU-CGUCGUGUC- -5'
29048 5' -56 NC_006146.1 + 3389 0.71 0.652373
Target:  5'- cGUCCUACAGGCccugaagcgugccUGUGaAGUGGCAgGGu -3'
miRNA:   3'- -CAGGAUGUCCG-------------ACACgUCGUCGUgUC- -5'
29048 5' -56 NC_006146.1 + 159494 0.73 0.520146
Target:  5'- gGUCCUGCAGGCUcUGCuuuuccAGCAGCuccacCAGc -3'
miRNA:   3'- -CAGGAUGUCCGAcACG------UCGUCGu----GUC- -5'
29048 5' -56 NC_006146.1 + 98402 0.74 0.443403
Target:  5'- cUCCUccGCAGGCgcUGCAGCcaGGCACGGg -3'
miRNA:   3'- cAGGA--UGUCCGacACGUCG--UCGUGUC- -5'
29048 5' -56 NC_006146.1 + 65471 0.76 0.357173
Target:  5'- -gCUgGCGGGCUGUGCGGguGCugAGc -3'
miRNA:   3'- caGGaUGUCCGACACGUCguCGugUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.