miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29049 3' -58.5 NC_006146.1 + 108607 0.67 0.749163
Target:  5'- cUCUCCCAGGuAGGGGuc-CGCGg--- -3'
miRNA:   3'- uAGAGGGUCC-UCCCCuacGCGUagaa -5'
29049 3' -58.5 NC_006146.1 + 50815 0.67 0.739459
Target:  5'- --gUCCCAGGGGGGGAUccuuggggGCucCGUCUUc -3'
miRNA:   3'- uagAGGGUCCUCCCCUA--------CGc-GUAGAA- -5'
29049 3' -58.5 NC_006146.1 + 16076 0.67 0.739459
Target:  5'- uUCUCCUguauaaAGGcAGGGGGUGgGUAUUUa -3'
miRNA:   3'- uAGAGGG------UCC-UCCCCUACgCGUAGAa -5'
29049 3' -58.5 NC_006146.1 + 53458 0.67 0.709822
Target:  5'- uGUCUgCCCGGGAGGcgcGGGUGCcuCGUCg- -3'
miRNA:   3'- -UAGA-GGGUCCUCC---CCUACGc-GUAGaa -5'
29049 3' -58.5 NC_006146.1 + 59533 0.68 0.67959
Target:  5'- cAUCcUCCAGGuGGGGGUGCaGCGUg-- -3'
miRNA:   3'- -UAGaGGGUCCuCCCCUACG-CGUAgaa -5'
29049 3' -58.5 NC_006146.1 + 41133 0.68 0.649007
Target:  5'- --gUCCCggGGGAGGGGcGUGCGCugacUCUg -3'
miRNA:   3'- uagAGGG--UCCUCCCC-UACGCGu---AGAa -5'
29049 3' -58.5 NC_006146.1 + 140624 0.68 0.638774
Target:  5'- ---gCCCAGGAGGGGAccacgGCGCucCUUg -3'
miRNA:   3'- uagaGGGUCCUCCCCUa----CGCGuaGAA- -5'
29049 3' -58.5 NC_006146.1 + 3368 0.69 0.618301
Target:  5'- -cCUCCCAGGAGaGGGGccggggGCGCGg--- -3'
miRNA:   3'- uaGAGGGUCCUC-CCCUa-----CGCGUagaa -5'
29049 3' -58.5 NC_006146.1 + 1504 0.69 0.618301
Target:  5'- -cCUCCCAGGAGaGGGGccggggGCGCGg--- -3'
miRNA:   3'- uaGAGGGUCCUC-CCCUa-----CGCGUagaa -5'
29049 3' -58.5 NC_006146.1 + 573 0.69 0.618301
Target:  5'- -cCUCCCAGGAGaGGGGccggggGCGCGg--- -3'
miRNA:   3'- uaGAGGGUCCUC-CCCUa-----CGCGUagaa -5'
29049 3' -58.5 NC_006146.1 + 2436 0.69 0.618301
Target:  5'- -cCUCCCAGGAGaGGGGccggggGCGCGg--- -3'
miRNA:   3'- uaGAGGGUCCUC-CCCUa-----CGCGUagaa -5'
29049 3' -58.5 NC_006146.1 + 137980 0.7 0.556361
Target:  5'- -cCUCCCGGGggcccggcgggguGGGGGGUGCGCc---- -3'
miRNA:   3'- uaGAGGGUCC-------------UCCCCUACGCGuagaa -5'
29049 3' -58.5 NC_006146.1 + 87767 1.02 0.003997
Target:  5'- uAUCUCCCAGGAGGGGAUGCGCAUCUUu -3'
miRNA:   3'- -UAGAGGGUCCUCCCCUACGCGUAGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.