miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29049 5' -61.5 NC_006146.1 + 50759 0.66 0.709144
Target:  5'- -gGGGCCGUccucgUCCUCGCUCUCcucgguggugUGGGc- -3'
miRNA:   3'- ugUCCGGCG-----AGGAGUGGGAG----------ACCCuc -5'
29049 5' -61.5 NC_006146.1 + 128237 0.66 0.709144
Target:  5'- cGCGGGgaGCUCUUCcgcuaCCUCUGGGc- -3'
miRNA:   3'- -UGUCCggCGAGGAGug---GGAGACCCuc -5'
29049 5' -61.5 NC_006146.1 + 86750 0.66 0.69949
Target:  5'- --cGGcCCGuCUCCUCACCCUgUUGuuucGGAGg -3'
miRNA:   3'- uguCC-GGC-GAGGAGUGGGA-GAC----CCUC- -5'
29049 5' -61.5 NC_006146.1 + 125867 0.66 0.69949
Target:  5'- cGCgAGGCC-CUCCUCgaagGCCUUCUGGu-- -3'
miRNA:   3'- -UG-UCCGGcGAGGAG----UGGGAGACCcuc -5'
29049 5' -61.5 NC_006146.1 + 16890 0.66 0.689784
Target:  5'- aGCGGGCCgGCUCCUUcCaCgUCaGGGAa -3'
miRNA:   3'- -UGUCCGG-CGAGGAGuG-GgAGaCCCUc -5'
29049 5' -61.5 NC_006146.1 + 130921 0.66 0.689784
Target:  5'- uACGGGCCGCagcagCCUCAgCCUCUc---- -3'
miRNA:   3'- -UGUCCGGCGa----GGAGUgGGAGAcccuc -5'
29049 5' -61.5 NC_006146.1 + 70652 0.66 0.689784
Target:  5'- cCAGaGCCGCUCa-CACCC-CgccagcGGGAGg -3'
miRNA:   3'- uGUC-CGGCGAGgaGUGGGaGa-----CCCUC- -5'
29049 5' -61.5 NC_006146.1 + 163861 0.66 0.670246
Target:  5'- gGCGGgaGCCGCUCUUCucCCCUUcccGGGAc -3'
miRNA:   3'- -UGUC--CGGCGAGGAGu-GGGAGa--CCCUc -5'
29049 5' -61.5 NC_006146.1 + 19038 0.67 0.640743
Target:  5'- gGCAGGCCGggUCUCGgg-UCUGGGGGu -3'
miRNA:   3'- -UGUCCGGCgaGGAGUgggAGACCCUC- -5'
29049 5' -61.5 NC_006146.1 + 25194 0.67 0.640743
Target:  5'- gGCAGGCCGggUCUCGgg-UCUGGGGGu -3'
miRNA:   3'- -UGUCCGGCgaGGAGUgggAGACCCUC- -5'
29049 5' -61.5 NC_006146.1 + 22116 0.67 0.640743
Target:  5'- gGCAGGCCGggUCUCGgg-UCUGGGGGu -3'
miRNA:   3'- -UGUCCGGCgaGGAGUgggAGACCCUC- -5'
29049 5' -61.5 NC_006146.1 + 28272 0.67 0.640743
Target:  5'- gGCAGGCCGggUCUCGgg-UCUGGGGGu -3'
miRNA:   3'- -UGUCCGGCgaGGAGUgggAGACCCUC- -5'
29049 5' -61.5 NC_006146.1 + 69652 0.67 0.640743
Target:  5'- aAUGGGcCCGCggUCCUCcUCCagCUGGGGGg -3'
miRNA:   3'- -UGUCC-GGCG--AGGAGuGGGa-GACCCUC- -5'
29049 5' -61.5 NC_006146.1 + 12883 0.67 0.640743
Target:  5'- gGCAGGCCGggUCUCGgg-UCUGGGGGu -3'
miRNA:   3'- -UGUCCGGCgaGGAGUgggAGACCCUC- -5'
29049 5' -61.5 NC_006146.1 + 121279 0.67 0.640743
Target:  5'- -gGGGCCGUgcaCCU-GCCCUCUGGa-- -3'
miRNA:   3'- ugUCCGGCGa--GGAgUGGGAGACCcuc -5'
29049 5' -61.5 NC_006146.1 + 39787 0.67 0.630886
Target:  5'- -uGGGCCcggaGCUCC-CGgCUUCUGGGAc -3'
miRNA:   3'- ugUCCGG----CGAGGaGUgGGAGACCCUc -5'
29049 5' -61.5 NC_006146.1 + 49687 0.67 0.630886
Target:  5'- gGCGGcGUCGUccUCCUcCACCCUCUccaGGGGc -3'
miRNA:   3'- -UGUC-CGGCG--AGGA-GUGGGAGA---CCCUc -5'
29049 5' -61.5 NC_006146.1 + 116201 0.67 0.627928
Target:  5'- cCGGGCCcgccguccccucgaGCUCauuuacgcCACCgUCUGGGAGg -3'
miRNA:   3'- uGUCCGG--------------CGAGga------GUGGgAGACCCUC- -5'
29049 5' -61.5 NC_006146.1 + 15406 0.67 0.62103
Target:  5'- uCAGGcCCGCcucaguccCCUCGCCC-CUGGGc- -3'
miRNA:   3'- uGUCC-GGCGa-------GGAGUGGGaGACCCuc -5'
29049 5' -61.5 NC_006146.1 + 21562 0.67 0.62103
Target:  5'- uCAGGcCCGCcucaguccCCUCGCCC-CUGGGc- -3'
miRNA:   3'- uGUCC-GGCGa-------GGAGUGGGaGACCCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.