miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29049 5' -61.5 NC_006146.1 + 87801 1.01 0.003677
Target:  5'- aACAGGCCGCUCCUCACCCUCUGGaGAGu -3'
miRNA:   3'- -UGUCCGGCGAGGAGUGGGAGACC-CUC- -5'
29049 5' -61.5 NC_006146.1 + 105857 0.77 0.180994
Target:  5'- cGCAGuGCCGCUCCUCGCagugggCC-CUGGGAc -3'
miRNA:   3'- -UGUC-CGGCGAGGAGUG------GGaGACCCUc -5'
29049 5' -61.5 NC_006146.1 + 83601 0.71 0.407792
Target:  5'- gGCuauGGCuCGCUgCUCAUCCUUggGGGAGu -3'
miRNA:   3'- -UGu--CCG-GCGAgGAGUGGGAGa-CCCUC- -5'
29049 5' -61.5 NC_006146.1 + 169391 0.7 0.441874
Target:  5'- cCGGGCCGCgcccCCggcCCCUCUccuGGGAGg -3'
miRNA:   3'- uGUCCGGCGa---GGaguGGGAGA---CCCUC- -5'
29049 5' -61.5 NC_006146.1 + 167527 0.7 0.441874
Target:  5'- cCGGGCCGCgcccCCggcCCCUCUccuGGGAGg -3'
miRNA:   3'- uGUCCGGCGa---GGaguGGGAGA---CCCUC- -5'
29049 5' -61.5 NC_006146.1 + 131021 0.7 0.441874
Target:  5'- cGCAGGCCGCUcagCCUCAgCCUCcucccccGGGc- -3'
miRNA:   3'- -UGUCCGGCGA---GGAGUgGGAGa------CCCuc -5'
29049 5' -61.5 NC_006146.1 + 168459 0.7 0.441874
Target:  5'- cCGGGCCGCgcccCCggcCCCUCUccuGGGAGg -3'
miRNA:   3'- uGUCCGGCGa---GGaguGGGAGA---CCCUC- -5'
29049 5' -61.5 NC_006146.1 + 170322 0.7 0.441874
Target:  5'- cCGGGCCGCgcccCCggcCCCUCUccuGGGAGg -3'
miRNA:   3'- uGUCCGGCGa---GGaguGGGAGA---CCCUC- -5'
29049 5' -61.5 NC_006146.1 + 129737 0.7 0.44537
Target:  5'- cACGGGCCGcCuccgaccccgaccagUCCUCGuCCCUCcaGGGAGc -3'
miRNA:   3'- -UGUCCGGC-G---------------AGGAGU-GGGAGa-CCCUC- -5'
29049 5' -61.5 NC_006146.1 + 124726 0.7 0.450643
Target:  5'- uCGGGCCGCUCuCUggcccCACCCgaguucCUGGGGc -3'
miRNA:   3'- uGUCCGGCGAG-GA-----GUGGGa-----GACCCUc -5'
29049 5' -61.5 NC_006146.1 + 43056 0.7 0.459508
Target:  5'- cGCcGGCUGCccaagCC-CACCCUCcagGGGAGg -3'
miRNA:   3'- -UGuCCGGCGa----GGaGUGGGAGa--CCCUC- -5'
29049 5' -61.5 NC_006146.1 + 94534 0.7 0.467565
Target:  5'- aACAuGCUGCUCCUacacaGCCCuuauuccucauuaUCUGGGGGa -3'
miRNA:   3'- -UGUcCGGCGAGGAg----UGGG-------------AGACCCUC- -5'
29049 5' -61.5 NC_006146.1 + 67154 0.69 0.505144
Target:  5'- cGCuGGCCGCUCCUgagcgCGgCgUCcGGGAGg -3'
miRNA:   3'- -UGuCCGGCGAGGA-----GUgGgAGaCCCUC- -5'
29049 5' -61.5 NC_006146.1 + 1645 0.69 0.505144
Target:  5'- cCAGGCCccgGC-CC-CGCCCUC-GGGAGc -3'
miRNA:   3'- uGUCCGG---CGaGGaGUGGGAGaCCCUC- -5'
29049 5' -61.5 NC_006146.1 + 714 0.69 0.505144
Target:  5'- cCAGGCCccgGC-CC-CGCCCUC-GGGAGc -3'
miRNA:   3'- uGUCCGG---CGaGGaGUGGGAGaCCCUC- -5'
29049 5' -61.5 NC_006146.1 + 2577 0.69 0.505144
Target:  5'- cCAGGCCccgGC-CC-CGCCCUC-GGGAGc -3'
miRNA:   3'- uGUCCGG---CGaGGaGUGGGAGaCCCUC- -5'
29049 5' -61.5 NC_006146.1 + 3509 0.69 0.505144
Target:  5'- cCAGGCCccgGC-CC-CGCCCUC-GGGAGc -3'
miRNA:   3'- uGUCCGG---CGaGGaGUGGGAGaCCCUC- -5'
29049 5' -61.5 NC_006146.1 + 33257 0.68 0.533443
Target:  5'- cCGGGCCGCUgCCcCGCuCCgggUGGGGGg -3'
miRNA:   3'- uGUCCGGCGA-GGaGUG-GGag-ACCCUC- -5'
29049 5' -61.5 NC_006146.1 + 33133 0.68 0.533443
Target:  5'- cCGGGCCGCUgCCcCGCuCCgggUGGGGGg -3'
miRNA:   3'- uGUCCGGCGA-GGaGUG-GGag-ACCCUC- -5'
29049 5' -61.5 NC_006146.1 + 33379 0.68 0.533443
Target:  5'- cCGGGCCGCUgCCcCGCuCCgggUGGGGGg -3'
miRNA:   3'- uGUCCGGCGA-GGaGUG-GGag-ACCCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.