miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29049 5' -61.5 NC_006146.1 + 21562 0.67 0.62103
Target:  5'- uCAGGcCCGCcucaguccCCUCGCCC-CUGGGc- -3'
miRNA:   3'- uGUCC-GGCGa-------GGAGUGGGaGACCCuc -5'
29049 5' -61.5 NC_006146.1 + 12327 0.67 0.62103
Target:  5'- uCAGGcCCGCcucaguccCCUCGCCC-CUGGGc- -3'
miRNA:   3'- uGUCC-GGCGa-------GGAGUGGGaGACCCuc -5'
29049 5' -61.5 NC_006146.1 + 24640 0.67 0.62103
Target:  5'- uCAGGcCCGCcucaguccCCUCGCCC-CUGGGc- -3'
miRNA:   3'- uGUCC-GGCGa-------GGAGUGGGaGACCCuc -5'
29049 5' -61.5 NC_006146.1 + 27718 0.67 0.62103
Target:  5'- uCAGGcCCGCcucaguccCCUCGCCC-CUGGGc- -3'
miRNA:   3'- uGUCC-GGCGa-------GGAGUGGGaGACCCuc -5'
29049 5' -61.5 NC_006146.1 + 80359 0.67 0.611182
Target:  5'- cCGGGCCcuGCUCC--ACCgCUCcGGGAGg -3'
miRNA:   3'- uGUCCGG--CGAGGagUGG-GAGaCCCUC- -5'
29049 5' -61.5 NC_006146.1 + 48701 0.67 0.591535
Target:  5'- cGCccGCCGCUCCgucCGCUCUCUGGc-- -3'
miRNA:   3'- -UGucCGGCGAGGa--GUGGGAGACCcuc -5'
29049 5' -61.5 NC_006146.1 + 115361 0.67 0.591535
Target:  5'- cACAGGCaGCgCgUC-CCCUCgGGGAGu -3'
miRNA:   3'- -UGUCCGgCGaGgAGuGGGAGaCCCUC- -5'
29049 5' -61.5 NC_006146.1 + 111155 0.68 0.58175
Target:  5'- gUAGcGCCGCUUCagGCgCUCgGGGAGg -3'
miRNA:   3'- uGUC-CGGCGAGGagUGgGAGaCCCUC- -5'
29049 5' -61.5 NC_006146.1 + 31825 0.68 0.546844
Target:  5'- gGCgAGGCCcguggccaaaguccaGCUUC-CGCCCUCUGGGu- -3'
miRNA:   3'- -UG-UCCGG---------------CGAGGaGUGGGAGACCCuc -5'
29049 5' -61.5 NC_006146.1 + 33379 0.68 0.533443
Target:  5'- cCGGGCCGCUgCCcCGCuCCgggUGGGGGg -3'
miRNA:   3'- uGUCCGGCGA-GGaGUG-GGag-ACCCUC- -5'
29049 5' -61.5 NC_006146.1 + 33257 0.68 0.533443
Target:  5'- cCGGGCCGCUgCCcCGCuCCgggUGGGGGg -3'
miRNA:   3'- uGUCCGGCGA-GGaGUG-GGag-ACCCUC- -5'
29049 5' -61.5 NC_006146.1 + 33133 0.68 0.533443
Target:  5'- cCGGGCCGCUgCCcCGCuCCgggUGGGGGg -3'
miRNA:   3'- uGUCCGGCGA-GGaGUG-GGag-ACCCUC- -5'
29049 5' -61.5 NC_006146.1 + 1645 0.69 0.505144
Target:  5'- cCAGGCCccgGC-CC-CGCCCUC-GGGAGc -3'
miRNA:   3'- uGUCCGG---CGaGGaGUGGGAGaCCCUC- -5'
29049 5' -61.5 NC_006146.1 + 67154 0.69 0.505144
Target:  5'- cGCuGGCCGCUCCUgagcgCGgCgUCcGGGAGg -3'
miRNA:   3'- -UGuCCGGCGAGGA-----GUgGgAGaCCCUC- -5'
29049 5' -61.5 NC_006146.1 + 714 0.69 0.505144
Target:  5'- cCAGGCCccgGC-CC-CGCCCUC-GGGAGc -3'
miRNA:   3'- uGUCCGG---CGaGGaGUGGGAGaCCCUC- -5'
29049 5' -61.5 NC_006146.1 + 2577 0.69 0.505144
Target:  5'- cCAGGCCccgGC-CC-CGCCCUC-GGGAGc -3'
miRNA:   3'- uGUCCGG---CGaGGaGUGGGAGaCCCUC- -5'
29049 5' -61.5 NC_006146.1 + 3509 0.69 0.505144
Target:  5'- cCAGGCCccgGC-CC-CGCCCUC-GGGAGc -3'
miRNA:   3'- uGUCCGG---CGaGGaGUGGGAGaCCCUC- -5'
29049 5' -61.5 NC_006146.1 + 94534 0.7 0.467565
Target:  5'- aACAuGCUGCUCCUacacaGCCCuuauuccucauuaUCUGGGGGa -3'
miRNA:   3'- -UGUcCGGCGAGGAg----UGGG-------------AGACCCUC- -5'
29049 5' -61.5 NC_006146.1 + 43056 0.7 0.459508
Target:  5'- cGCcGGCUGCccaagCC-CACCCUCcagGGGAGg -3'
miRNA:   3'- -UGuCCGGCGa----GGaGUGGGAGa--CCCUC- -5'
29049 5' -61.5 NC_006146.1 + 124726 0.7 0.450643
Target:  5'- uCGGGCCGCUCuCUggcccCACCCgaguucCUGGGGc -3'
miRNA:   3'- uGUCCGGCGAG-GA-----GUGGGa-----GACCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.