miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29049 5' -61.5 NC_006146.1 + 714 0.69 0.505144
Target:  5'- cCAGGCCccgGC-CC-CGCCCUC-GGGAGc -3'
miRNA:   3'- uGUCCGG---CGaGGaGUGGGAGaCCCUC- -5'
29049 5' -61.5 NC_006146.1 + 1645 0.69 0.505144
Target:  5'- cCAGGCCccgGC-CC-CGCCCUC-GGGAGc -3'
miRNA:   3'- uGUCCGG---CGaGGaGUGGGAGaCCCUC- -5'
29049 5' -61.5 NC_006146.1 + 2577 0.69 0.505144
Target:  5'- cCAGGCCccgGC-CC-CGCCCUC-GGGAGc -3'
miRNA:   3'- uGUCCGG---CGaGGaGUGGGAGaCCCUC- -5'
29049 5' -61.5 NC_006146.1 + 3509 0.69 0.505144
Target:  5'- cCAGGCCccgGC-CC-CGCCCUC-GGGAGc -3'
miRNA:   3'- uGUCCGG---CGaGGaGUGGGAGaCCCUC- -5'
29049 5' -61.5 NC_006146.1 + 12327 0.67 0.62103
Target:  5'- uCAGGcCCGCcucaguccCCUCGCCC-CUGGGc- -3'
miRNA:   3'- uGUCC-GGCGa-------GGAGUGGGaGACCCuc -5'
29049 5' -61.5 NC_006146.1 + 12883 0.67 0.640743
Target:  5'- gGCAGGCCGggUCUCGgg-UCUGGGGGu -3'
miRNA:   3'- -UGUCCGGCgaGGAGUgggAGACCCUC- -5'
29049 5' -61.5 NC_006146.1 + 15406 0.67 0.62103
Target:  5'- uCAGGcCCGCcucaguccCCUCGCCC-CUGGGc- -3'
miRNA:   3'- uGUCC-GGCGa-------GGAGUGGGaGACCCuc -5'
29049 5' -61.5 NC_006146.1 + 16890 0.66 0.689784
Target:  5'- aGCGGGCCgGCUCCUUcCaCgUCaGGGAa -3'
miRNA:   3'- -UGUCCGG-CGAGGAGuG-GgAGaCCCUc -5'
29049 5' -61.5 NC_006146.1 + 18484 0.67 0.62103
Target:  5'- uCAGGcCCGCcucaguccCCUCGCCC-CUGGGc- -3'
miRNA:   3'- uGUCC-GGCGa-------GGAGUGGGaGACCCuc -5'
29049 5' -61.5 NC_006146.1 + 19038 0.67 0.640743
Target:  5'- gGCAGGCCGggUCUCGgg-UCUGGGGGu -3'
miRNA:   3'- -UGUCCGGCgaGGAGUgggAGACCCUC- -5'
29049 5' -61.5 NC_006146.1 + 21562 0.67 0.62103
Target:  5'- uCAGGcCCGCcucaguccCCUCGCCC-CUGGGc- -3'
miRNA:   3'- uGUCC-GGCGa-------GGAGUGGGaGACCCuc -5'
29049 5' -61.5 NC_006146.1 + 22116 0.67 0.640743
Target:  5'- gGCAGGCCGggUCUCGgg-UCUGGGGGu -3'
miRNA:   3'- -UGUCCGGCgaGGAGUgggAGACCCUC- -5'
29049 5' -61.5 NC_006146.1 + 24640 0.67 0.62103
Target:  5'- uCAGGcCCGCcucaguccCCUCGCCC-CUGGGc- -3'
miRNA:   3'- uGUCC-GGCGa-------GGAGUGGGaGACCCuc -5'
29049 5' -61.5 NC_006146.1 + 25194 0.67 0.640743
Target:  5'- gGCAGGCCGggUCUCGgg-UCUGGGGGu -3'
miRNA:   3'- -UGUCCGGCgaGGAGUgggAGACCCUC- -5'
29049 5' -61.5 NC_006146.1 + 27718 0.67 0.62103
Target:  5'- uCAGGcCCGCcucaguccCCUCGCCC-CUGGGc- -3'
miRNA:   3'- uGUCC-GGCGa-------GGAGUGGGaGACCCuc -5'
29049 5' -61.5 NC_006146.1 + 28272 0.67 0.640743
Target:  5'- gGCAGGCCGggUCUCGgg-UCUGGGGGu -3'
miRNA:   3'- -UGUCCGGCgaGGAGUgggAGACCCUC- -5'
29049 5' -61.5 NC_006146.1 + 31825 0.68 0.546844
Target:  5'- gGCgAGGCCcguggccaaaguccaGCUUC-CGCCCUCUGGGu- -3'
miRNA:   3'- -UG-UCCGG---------------CGAGGaGUGGGAGACCCuc -5'
29049 5' -61.5 NC_006146.1 + 33133 0.68 0.533443
Target:  5'- cCGGGCCGCUgCCcCGCuCCgggUGGGGGg -3'
miRNA:   3'- uGUCCGGCGA-GGaGUG-GGag-ACCCUC- -5'
29049 5' -61.5 NC_006146.1 + 33257 0.68 0.533443
Target:  5'- cCGGGCCGCUgCCcCGCuCCgggUGGGGGg -3'
miRNA:   3'- uGUCCGGCGA-GGaGUG-GGag-ACCCUC- -5'
29049 5' -61.5 NC_006146.1 + 33379 0.68 0.533443
Target:  5'- cCGGGCCGCUgCCcCGCuCCgggUGGGGGg -3'
miRNA:   3'- uGUCCGGCGA-GGaGUG-GGag-ACCCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.