miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29049 5' -61.5 NC_006146.1 + 169391 0.7 0.441874
Target:  5'- cCGGGCCGCgcccCCggcCCCUCUccuGGGAGg -3'
miRNA:   3'- uGUCCGGCGa---GGaguGGGAGA---CCCUC- -5'
29049 5' -61.5 NC_006146.1 + 21562 0.67 0.62103
Target:  5'- uCAGGcCCGCcucaguccCCUCGCCC-CUGGGc- -3'
miRNA:   3'- uGUCC-GGCGa-------GGAGUGGGaGACCCuc -5'
29049 5' -61.5 NC_006146.1 + 27718 0.67 0.62103
Target:  5'- uCAGGcCCGCcucaguccCCUCGCCC-CUGGGc- -3'
miRNA:   3'- uGUCC-GGCGa-------GGAGUGGGaGACCCuc -5'
29049 5' -61.5 NC_006146.1 + 128237 0.66 0.709144
Target:  5'- cGCGGGgaGCUCUUCcgcuaCCUCUGGGc- -3'
miRNA:   3'- -UGUCCggCGAGGAGug---GGAGACCCuc -5'
29049 5' -61.5 NC_006146.1 + 33133 0.68 0.533443
Target:  5'- cCGGGCCGCUgCCcCGCuCCgggUGGGGGg -3'
miRNA:   3'- uGUCCGGCGA-GGaGUG-GGag-ACCCUC- -5'
29049 5' -61.5 NC_006146.1 + 87801 1.01 0.003677
Target:  5'- aACAGGCCGCUCCUCACCCUCUGGaGAGu -3'
miRNA:   3'- -UGUCCGGCGAGGAGUGGGAGACC-CUC- -5'
29049 5' -61.5 NC_006146.1 + 105857 0.77 0.180994
Target:  5'- cGCAGuGCCGCUCCUCGCagugggCC-CUGGGAc -3'
miRNA:   3'- -UGUC-CGGCGAGGAGUG------GGaGACCCUc -5'
29049 5' -61.5 NC_006146.1 + 131021 0.7 0.441874
Target:  5'- cGCAGGCCGCUcagCCUCAgCCUCcucccccGGGc- -3'
miRNA:   3'- -UGUCCGGCGA---GGAGUgGGAGa------CCCuc -5'
29049 5' -61.5 NC_006146.1 + 167527 0.7 0.441874
Target:  5'- cCGGGCCGCgcccCCggcCCCUCUccuGGGAGg -3'
miRNA:   3'- uGUCCGGCGa---GGaguGGGAGA---CCCUC- -5'
29049 5' -61.5 NC_006146.1 + 18484 0.67 0.62103
Target:  5'- uCAGGcCCGCcucaguccCCUCGCCC-CUGGGc- -3'
miRNA:   3'- uGUCC-GGCGa-------GGAGUGGGaGACCCuc -5'
29049 5' -61.5 NC_006146.1 + 48701 0.67 0.591535
Target:  5'- cGCccGCCGCUCCgucCGCUCUCUGGc-- -3'
miRNA:   3'- -UGucCGGCGAGGa--GUGGGAGACCcuc -5'
29049 5' -61.5 NC_006146.1 + 115361 0.67 0.591535
Target:  5'- cACAGGCaGCgCgUC-CCCUCgGGGAGu -3'
miRNA:   3'- -UGUCCGgCGaGgAGuGGGAGaCCCUC- -5'
29049 5' -61.5 NC_006146.1 + 170322 0.7 0.441874
Target:  5'- cCGGGCCGCgcccCCggcCCCUCUccuGGGAGg -3'
miRNA:   3'- uGUCCGGCGa---GGaguGGGAGA---CCCUC- -5'
29049 5' -61.5 NC_006146.1 + 12327 0.67 0.62103
Target:  5'- uCAGGcCCGCcucaguccCCUCGCCC-CUGGGc- -3'
miRNA:   3'- uGUCC-GGCGa-------GGAGUGGGaGACCCuc -5'
29049 5' -61.5 NC_006146.1 + 43056 0.7 0.459508
Target:  5'- cGCcGGCUGCccaagCC-CACCCUCcagGGGAGg -3'
miRNA:   3'- -UGuCCGGCGa----GGaGUGGGAGa--CCCUC- -5'
29049 5' -61.5 NC_006146.1 + 33379 0.68 0.533443
Target:  5'- cCGGGCCGCUgCCcCGCuCCgggUGGGGGg -3'
miRNA:   3'- uGUCCGGCGA-GGaGUG-GGag-ACCCUC- -5'
29049 5' -61.5 NC_006146.1 + 15406 0.67 0.62103
Target:  5'- uCAGGcCCGCcucaguccCCUCGCCC-CUGGGc- -3'
miRNA:   3'- uGUCC-GGCGa-------GGAGUGGGaGACCCuc -5'
29049 5' -61.5 NC_006146.1 + 24640 0.67 0.62103
Target:  5'- uCAGGcCCGCcucaguccCCUCGCCC-CUGGGc- -3'
miRNA:   3'- uGUCC-GGCGa-------GGAGUGGGaGACCCuc -5'
29049 5' -61.5 NC_006146.1 + 67154 0.69 0.505144
Target:  5'- cGCuGGCCGCUCCUgagcgCGgCgUCcGGGAGg -3'
miRNA:   3'- -UGuCCGGCGAGGA-----GUgGgAGaCCCUC- -5'
29049 5' -61.5 NC_006146.1 + 33257 0.68 0.533443
Target:  5'- cCGGGCCGCUgCCcCGCuCCgggUGGGGGg -3'
miRNA:   3'- uGUCCGGCGA-GGaGUG-GGag-ACCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.