Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2905 | 5' | -54.7 | NC_001493.1 | + | 84712 | 0.72 | 0.633291 |
Target: 5'- cUGGAGgGUGAggauCUgGAGGGGGGUa- -3' miRNA: 3'- -ACCUUgCGCUau--GAgUUCCCCCCAcc -5' |
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2905 | 5' | -54.7 | NC_001493.1 | + | 113426 | 0.66 | 0.936491 |
Target: 5'- aUGGAGUGUGGUGga-AAGGGGGGUugcgaGGa -3' miRNA: 3'- -ACCUUGCGCUAUgagUUCCCCCCA-----CC- -5' |
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2905 | 5' | -54.7 | NC_001493.1 | + | 55111 | 0.66 | 0.936491 |
Target: 5'- cUGGAuccCGCaGAUuCUCAAGaGGGGGa-- -3' miRNA: 3'- -ACCUu--GCG-CUAuGAGUUC-CCCCCacc -5' |
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2905 | 5' | -54.7 | NC_001493.1 | + | 36224 | 0.67 | 0.914884 |
Target: 5'- cGGccuGCGCGGgggUGCUCAguGGGGcGGGUugcgcGGa -3' miRNA: 3'- aCCu--UGCGCU---AUGAGU--UCCC-CCCA-----CC- -5' |
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2905 | 5' | -54.7 | NC_001493.1 | + | 18686 | 0.68 | 0.855604 |
Target: 5'- cGGAACGCacaccGGUcgggcacgaccccucACUCuccGGGaGGGGUGGu -3' miRNA: 3'- aCCUUGCG-----CUA---------------UGAGu--UCC-CCCCACC- -5' |
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2905 | 5' | -54.7 | NC_001493.1 | + | 130553 | 0.69 | 0.819187 |
Target: 5'- gGGggUGCGA---UCGAGGccgcGGGUGGa -3' miRNA: 3'- aCCuuGCGCUaugAGUUCCc---CCCACC- -5' |
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2905 | 5' | -54.7 | NC_001493.1 | + | 14998 | 0.69 | 0.819187 |
Target: 5'- gGGggUGCGA---UCGAGGccgcGGGUGGa -3' miRNA: 3'- aCCuuGCGCUaugAGUUCCc---CCCACC- -5' |
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2905 | 5' | -54.7 | NC_001493.1 | + | 124706 | 0.7 | 0.744928 |
Target: 5'- gGGAugGCGg----CGAGGGGGGaGGc -3' miRNA: 3'- aCCUugCGCuaugaGUUCCCCCCaCC- -5' |
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2905 | 5' | -54.7 | NC_001493.1 | + | 9151 | 0.7 | 0.744928 |
Target: 5'- gGGAugGCGg----CGAGGGGGGaGGc -3' miRNA: 3'- aCCUugCGCuaugaGUUCCCCCCaCC- -5' |
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2905 | 5' | -54.7 | NC_001493.1 | + | 39980 | 0.71 | 0.735095 |
Target: 5'- cGGAACuCuGUACUgu-GGGGGGUGGu -3' miRNA: 3'- aCCUUGcGcUAUGAguuCCCCCCACC- -5' |
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2905 | 5' | -54.7 | NC_001493.1 | + | 129674 | 0.71 | 0.72517 |
Target: 5'- gGGGugGUGGUGg-CGAuGGGGGUGGc -3' miRNA: 3'- aCCUugCGCUAUgaGUUcCCCCCACC- -5' |
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2905 | 5' | -54.7 | NC_001493.1 | + | 14119 | 0.71 | 0.72517 |
Target: 5'- gGGGugGUGGUGg-CGAuGGGGGUGGc -3' miRNA: 3'- aCCUugCGCUAUgaGUUcCCCCCACC- -5' |
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2905 | 5' | -54.7 | NC_001493.1 | + | 118554 | 0.71 | 0.715165 |
Target: 5'- cGGAugGUcGUGCUCAAcGGGauGGUGGa -3' miRNA: 3'- aCCUugCGcUAUGAGUUcCCC--CCACC- -5' |
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2905 | 5' | -54.7 | NC_001493.1 | + | 2999 | 0.71 | 0.715165 |
Target: 5'- cGGAugGUcGUGCUCAAcGGGauGGUGGa -3' miRNA: 3'- aCCUugCGcUAUGAGUUcCCC--CCACC- -5' |
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2905 | 5' | -54.7 | NC_001493.1 | + | 115700 | 0.67 | 0.89614 |
Target: 5'- gGGGGCGUGGggguggCGAGGGuGGGUcuGGa -3' miRNA: 3'- aCCUUGCGCUauga--GUUCCC-CCCA--CC- -5' |
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2905 | 5' | -54.7 | NC_001493.1 | + | 18820 | 0.68 | 0.875289 |
Target: 5'- -cGggUGUGGUGCgagcGGGGGGUGa -3' miRNA: 3'- acCuuGCGCUAUGaguuCCCCCCACc -5' |
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2905 | 5' | -54.7 | NC_001493.1 | + | 3795 | 0.69 | 0.839509 |
Target: 5'- aGGAGCGCGccccugugcgaaccgGUAUUCGcGGGGGcGGcGGg -3' miRNA: 3'- aCCUUGCGC---------------UAUGAGU-UCCCC-CCaCC- -5' |
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2905 | 5' | -54.7 | NC_001493.1 | + | 119349 | 0.69 | 0.839509 |
Target: 5'- aGGAGCGCGccccugugcgaaccgGUAUUCGcGGGGGcGGcGGg -3' miRNA: 3'- aCCUUGCGC---------------UAUGAGU-UCCCC-CCaCC- -5' |
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2905 | 5' | -54.7 | NC_001493.1 | + | 28725 | 0.72 | 0.653937 |
Target: 5'- cUGGAGCGCGGgauggACUCGAGGcggaacucGGGcGUGu -3' miRNA: 3'- -ACCUUGCGCUa----UGAGUUCC--------CCC-CACc -5' |
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2905 | 5' | -54.7 | NC_001493.1 | + | 71274 | 0.66 | 0.939397 |
Target: 5'- gGGAGCGCgugaaauuGAUACagggccugaaaacCAGGgauGGGGGUGGa -3' miRNA: 3'- aCCUUGCG--------CUAUGa------------GUUC---CCCCCACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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