miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29050 3' -55.6 NC_006146.1 + 128664 0.66 0.936744
Target:  5'- gACgGCGG-GGACGGGCAggagacAACGGgCg- -3'
miRNA:   3'- -UGgUGCCuCCUGUUCGU------UUGCCgGac -5'
29050 3' -55.6 NC_006146.1 + 166865 0.66 0.936744
Target:  5'- aGCCcgGCGGgaGGGGgGAGCGGAgGGCgaGg -3'
miRNA:   3'- -UGG--UGCC--UCCUgUUCGUUUgCCGgaC- -5'
29050 3' -55.6 NC_006146.1 + 165464 0.66 0.936744
Target:  5'- gGCCAguaGGaAGGcCAGGCAGAaGGCCa- -3'
miRNA:   3'- -UGGUg--CC-UCCuGUUCGUUUgCCGGac -5'
29050 3' -55.6 NC_006146.1 + 39278 0.66 0.936744
Target:  5'- gGCCccggacucgagACGGcAGGugGcAGCAGA-GGCCUGu -3'
miRNA:   3'- -UGG-----------UGCC-UCCugU-UCGUUUgCCGGAC- -5'
29050 3' -55.6 NC_006146.1 + 113078 0.66 0.936744
Target:  5'- uGCC-UGGAGGuugGAGCAccCGGCCUc -3'
miRNA:   3'- -UGGuGCCUCCug-UUCGUuuGCCGGAc -5'
29050 3' -55.6 NC_006146.1 + 163276 0.66 0.936744
Target:  5'- gACCAUcucgGGAGuGAgGAGCAGACuGGCUc- -3'
miRNA:   3'- -UGGUG----CCUC-CUgUUCGUUUG-CCGGac -5'
29050 3' -55.6 NC_006146.1 + 23765 0.66 0.936744
Target:  5'- uGCCGCGGc---CGAGaauGGCGGCCUGc -3'
miRNA:   3'- -UGGUGCCuccuGUUCgu-UUGCCGGAC- -5'
29050 3' -55.6 NC_006146.1 + 20756 0.66 0.936744
Target:  5'- gACCAUccuGGACAAGCAgcAGCuGGCCa- -3'
miRNA:   3'- -UGGUGccuCCUGUUCGU--UUG-CCGGac -5'
29050 3' -55.6 NC_006146.1 + 11042 0.66 0.936744
Target:  5'- gACCAgGGAGGuguuUggGUAcGACGGCUa- -3'
miRNA:   3'- -UGGUgCCUCCu---GuuCGU-UUGCCGGac -5'
29050 3' -55.6 NC_006146.1 + 26094 0.66 0.931761
Target:  5'- aGCCG-GGAGGGgAGGCAcggaGGCCa- -3'
miRNA:   3'- -UGGUgCCUCCUgUUCGUuug-CCGGac -5'
29050 3' -55.6 NC_006146.1 + 103688 0.66 0.931761
Target:  5'- uGCCugGccGGcCAGGCGAcCGGCCa- -3'
miRNA:   3'- -UGGugCcuCCuGUUCGUUuGCCGGac -5'
29050 3' -55.6 NC_006146.1 + 56570 0.66 0.931761
Target:  5'- uCCAgGGuGGugAuGCAGGCG-CCUGg -3'
miRNA:   3'- uGGUgCCuCCugUuCGUUUGCcGGAC- -5'
29050 3' -55.6 NC_006146.1 + 40008 0.66 0.931761
Target:  5'- gGCCGguGuGGGCGuAGCAGGgGGCCUGc -3'
miRNA:   3'- -UGGUgcCuCCUGU-UCGUUUgCCGGAC- -5'
29050 3' -55.6 NC_006146.1 + 137664 0.66 0.931761
Target:  5'- gGCC-CGGcGGACccGCcGGCGGCCa- -3'
miRNA:   3'- -UGGuGCCuCCUGuuCGuUUGCCGGac -5'
29050 3' -55.6 NC_006146.1 + 45563 0.66 0.93125
Target:  5'- gGCCucCGcGAGGagcucgcGCAGcCAGGCGGCCUGc -3'
miRNA:   3'- -UGGu-GC-CUCC-------UGUUcGUUUGCCGGAC- -5'
29050 3' -55.6 NC_006146.1 + 47017 0.66 0.926539
Target:  5'- gGCC-CGGucGGACucGCGGGCGcCCUGg -3'
miRNA:   3'- -UGGuGCCu-CCUGuuCGUUUGCcGGAC- -5'
29050 3' -55.6 NC_006146.1 + 85912 0.66 0.926539
Target:  5'- aGCCGCGGGGcuuuACccugGGGCcuGGAUGGCCUGc -3'
miRNA:   3'- -UGGUGCCUCc---UG----UUCG--UUUGCCGGAC- -5'
29050 3' -55.6 NC_006146.1 + 39038 0.66 0.926539
Target:  5'- -aCAUGGGGGccaGCAGGCAGG-GGcCCUGu -3'
miRNA:   3'- ugGUGCCUCC---UGUUCGUUUgCC-GGAC- -5'
29050 3' -55.6 NC_006146.1 + 40569 0.66 0.926004
Target:  5'- --uGCGGGGGACGcugaugagguccuGGCccuGGGCGGCCg- -3'
miRNA:   3'- uggUGCCUCCUGU-------------UCG---UUUGCCGGac -5'
29050 3' -55.6 NC_006146.1 + 116800 0.66 0.923291
Target:  5'- gGCCACGGGGGGgagcagguuagggucCAAgagcgcGCAAACGuaCUGa -3'
miRNA:   3'- -UGGUGCCUCCU---------------GUU------CGUUUGCcgGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.