miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29051 5' -52.1 NC_006146.1 + 48733 0.66 0.989561
Target:  5'- --gCUCGCgCAGCAGCUccuucucCUUGCGCc- -3'
miRNA:   3'- cagGAGCG-GUUGUUGAa------GAACGCGcu -5'
29051 5' -52.1 NC_006146.1 + 72997 0.66 0.988132
Target:  5'- --gCUCGCCu-CAGCUcCUUGUGCa- -3'
miRNA:   3'- cagGAGCGGuuGUUGAaGAACGCGcu -5'
29051 5' -52.1 NC_006146.1 + 127348 0.67 0.976161
Target:  5'- -aCCgcgUGCCGcgucuccuACuGCUUCUUGCGCGc -3'
miRNA:   3'- caGGa--GCGGU--------UGuUGAAGAACGCGCu -5'
29051 5' -52.1 NC_006146.1 + 42236 0.68 0.960829
Target:  5'- cUUUUUGCCAACGACccccUCcgGCGCGAg -3'
miRNA:   3'- cAGGAGCGGUUGUUGa---AGaaCGCGCU- -5'
29051 5' -52.1 NC_006146.1 + 46759 0.68 0.957858
Target:  5'- gGUCCUCGCCucccgaccccgggcgGAUGGCUggccggccgGCGCGAg -3'
miRNA:   3'- -CAGGAGCGG---------------UUGUUGAagaa-----CGCGCU- -5'
29051 5' -52.1 NC_006146.1 + 167027 0.71 0.886183
Target:  5'- -gCCUCGCCGagaccaGCAGCUUCUcGUucauGCGAu -3'
miRNA:   3'- caGGAGCGGU------UGUUGAAGAaCG----CGCU- -5'
29051 5' -52.1 NC_006146.1 + 117970 0.72 0.822677
Target:  5'- aUCCUCGCCAugAAaUUCUcaaaggUGCGCa- -3'
miRNA:   3'- cAGGAGCGGUugUUgAAGA------ACGCGcu -5'
29051 5' -52.1 NC_006146.1 + 67695 0.74 0.737668
Target:  5'- aGUCC-CGCC-GCAGCUUUUcgcGCGCGAa -3'
miRNA:   3'- -CAGGaGCGGuUGUUGAAGAa--CGCGCU- -5'
29051 5' -52.1 NC_006146.1 + 150182 0.77 0.560284
Target:  5'- gGUCCUcgcaggcCGCCAGCAGCUUCUuaauggccuUGCGCu- -3'
miRNA:   3'- -CAGGA-------GCGGUUGUUGAAGA---------ACGCGcu -5'
29051 5' -52.1 NC_006146.1 + 15902 0.82 0.340014
Target:  5'- -gCCUCgaGCCAGCAACUUCUgugccgggcccUGCGCGAg -3'
miRNA:   3'- caGGAG--CGGUUGUUGAAGA-----------ACGCGCU- -5'
29051 5' -52.1 NC_006146.1 + 92393 1.09 0.006812
Target:  5'- uGUCCUCGCCAACAACUUCUUGCGCGAg -3'
miRNA:   3'- -CAGGAGCGGUUGUUGAAGAACGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.