miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29053 3' -57 NC_006146.1 + 101876 0.66 0.904427
Target:  5'- gGGCGAGGAcGGUGgcGGGaaUCUCa- -3'
miRNA:   3'- gCUGCUCCUuCCACuuCCCc-GGAGac -5'
29053 3' -57 NC_006146.1 + 38402 0.66 0.904427
Target:  5'- gGAUGcauGGGguGGUGGcaucugggauuAGcGGGCCUCUGc -3'
miRNA:   3'- gCUGC---UCCuuCCACU-----------UC-CCCGGAGAC- -5'
29053 3' -57 NC_006146.1 + 116330 0.66 0.904427
Target:  5'- aGAgGAGGAGGGgGAAGGcGGCg---- -3'
miRNA:   3'- gCUgCUCCUUCCaCUUCC-CCGgagac -5'
29053 3' -57 NC_006146.1 + 50740 0.66 0.904427
Target:  5'- gCGACGGGGcgucGG-GAAGGGGgccguCCUCg- -3'
miRNA:   3'- -GCUGCUCCuu--CCaCUUCCCC-----GGAGac -5'
29053 3' -57 NC_006146.1 + 71231 0.66 0.898174
Target:  5'- aGAauugGuGGGAGGUGGAGGGGUggUUGc -3'
miRNA:   3'- gCUg---CuCCUUCCACUUCCCCGgaGAC- -5'
29053 3' -57 NC_006146.1 + 97726 0.66 0.898174
Target:  5'- uCGACcuaugccGGGAGGUGcuGGGGcGCCUCa- -3'
miRNA:   3'- -GCUGcu-----CCUUCCACu-UCCC-CGGAGac -5'
29053 3' -57 NC_006146.1 + 137399 0.66 0.885002
Target:  5'- aGGCcGGGAGGGUGcuGGGGUCcCg- -3'
miRNA:   3'- gCUGcUCCUUCCACuuCCCCGGaGac -5'
29053 3' -57 NC_006146.1 + 62926 0.66 0.885002
Target:  5'- aGAUGcGGAGGGUGAGGcuGuGCCUgUGg -3'
miRNA:   3'- gCUGCuCCUUCCACUUCc-C-CGGAgAC- -5'
29053 3' -57 NC_006146.1 + 139629 0.66 0.882263
Target:  5'- cCGAUGGGGGAGGcauguguugaggaGGAGGaGGCCUg-- -3'
miRNA:   3'- -GCUGCUCCUUCCa------------CUUCC-CCGGAgac -5'
29053 3' -57 NC_006146.1 + 44018 0.66 0.878089
Target:  5'- gCGGCGGGGAGGGggcgGccGaGGGCCcCg- -3'
miRNA:   3'- -GCUGCUCCUUCCa---CuuC-CCCGGaGac -5'
29053 3' -57 NC_006146.1 + 152859 0.66 0.878089
Target:  5'- uCGAUGAGGGAGGUGuuuAGGGcGaugaaggUCUGc -3'
miRNA:   3'- -GCUGCUCCUUCCACu--UCCC-Cgg-----AGAC- -5'
29053 3' -57 NC_006146.1 + 39856 0.66 0.878089
Target:  5'- cCGGCGGGGGcugugugcccGGG-GGAGGaGGCUgaggCUGa -3'
miRNA:   3'- -GCUGCUCCU----------UCCaCUUCC-CCGGa---GAC- -5'
29053 3' -57 NC_006146.1 + 113967 0.67 0.870964
Target:  5'- gGAaGAGGggGGUGcccGGGGGCUcCg- -3'
miRNA:   3'- gCUgCUCCuuCCACu--UCCCCGGaGac -5'
29053 3' -57 NC_006146.1 + 151890 0.67 0.870964
Target:  5'- aGACGuGGAAcucGAGGGGGCCcccacuggggUCUGg -3'
miRNA:   3'- gCUGCuCCUUccaCUUCCCCGG----------AGAC- -5'
29053 3' -57 NC_006146.1 + 32000 0.67 0.87024
Target:  5'- aGGCGAcacgcuaGGAGGacaGAGGGGCCUCg- -3'
miRNA:   3'- gCUGCU-------CCUUCcacUUCCCCGGAGac -5'
29053 3' -57 NC_006146.1 + 105327 0.67 0.86659
Target:  5'- gGACcccaugGAGGAGGGUGAGguagacuccacggacGGGGagaucucuuCCUCUGa -3'
miRNA:   3'- gCUG------CUCCUUCCACUU---------------CCCC---------GGAGAC- -5'
29053 3' -57 NC_006146.1 + 49312 0.67 0.863632
Target:  5'- uGACGAGcu--GUGAGGGGGCUUUa- -3'
miRNA:   3'- gCUGCUCcuucCACUUCCCCGGAGac -5'
29053 3' -57 NC_006146.1 + 53542 0.67 0.863632
Target:  5'- -cGCGAGGAcc---GAGGGGCUUCUGg -3'
miRNA:   3'- gcUGCUCCUuccacUUCCCCGGAGAC- -5'
29053 3' -57 NC_006146.1 + 56817 0.67 0.863632
Target:  5'- gGGCGGGGcuucuGGcccccGAGGcGGCCUCUGg -3'
miRNA:   3'- gCUGCUCCuu---CCac---UUCC-CCGGAGAC- -5'
29053 3' -57 NC_006146.1 + 44313 0.67 0.863632
Target:  5'- aGugGGGGcuGGGGccgUGGcagccGGGGGCUUCUGc -3'
miRNA:   3'- gCugCUCC--UUCC---ACU-----UCCCCGGAGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.