miRNA display CGI


Results 1 - 20 of 180 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29053 5' -58.7 NC_006146.1 + 42398 0.66 0.826983
Target:  5'- cCCAGGGCCaccccgaCGCcGUCCUCgAagGCg -3'
miRNA:   3'- aGGUCCCGGa------GCGuUAGGAGgUggUG- -5'
29053 5' -58.7 NC_006146.1 + 3275 0.66 0.826983
Target:  5'- gCC-GGGCCcCGCGGgaccccccCCUCCGCCc- -3'
miRNA:   3'- aGGuCCCGGaGCGUUa-------GGAGGUGGug -5'
29053 5' -58.7 NC_006146.1 + 2343 0.66 0.826983
Target:  5'- gCC-GGGCCcCGCGGgaccccccCCUCCGCCc- -3'
miRNA:   3'- aGGuCCCGGaGCGUUa-------GGAGGUGGug -5'
29053 5' -58.7 NC_006146.1 + 1411 0.66 0.826983
Target:  5'- gCC-GGGCCcCGCGGgaccccccCCUCCGCCc- -3'
miRNA:   3'- aGGuCCCGGaGCGUUa-------GGAGGUGGug -5'
29053 5' -58.7 NC_006146.1 + 480 0.66 0.826983
Target:  5'- gCC-GGGCCcCGCGGgaccccccCCUCCGCCc- -3'
miRNA:   3'- aGGuCCCGGaGCGUUa-------GGAGGUGGug -5'
29053 5' -58.7 NC_006146.1 + 76296 0.66 0.826983
Target:  5'- aCguGGGCUggaCGCGGcucuUCCUCUcCCACg -3'
miRNA:   3'- aGguCCCGGa--GCGUU----AGGAGGuGGUG- -5'
29053 5' -58.7 NC_006146.1 + 3008 0.66 0.826983
Target:  5'- gCUGGGGCCUUuccaucccuggaGCAA-CCUC-ACCGCa -3'
miRNA:   3'- aGGUCCCGGAG------------CGUUaGGAGgUGGUG- -5'
29053 5' -58.7 NC_006146.1 + 48209 0.66 0.826983
Target:  5'- aUCCggggacuggAGGGCCUgGCGcgCCUgggugagCGCCGCg -3'
miRNA:   3'- -AGG---------UCCCGGAgCGUuaGGAg------GUGGUG- -5'
29053 5' -58.7 NC_006146.1 + 29647 0.66 0.826153
Target:  5'- gUCCAGGGguCCUCGaggaagaggccCAGUCCacucagccccgugUCCACUGCc -3'
miRNA:   3'- -AGGUCCC--GGAGC-----------GUUAGG-------------AGGUGGUG- -5'
29053 5' -58.7 NC_006146.1 + 26569 0.66 0.826153
Target:  5'- gUCCAGGGguCCUCGaggaagaggccCAGUCCacucagccccgugUCCACUGCc -3'
miRNA:   3'- -AGGUCCC--GGAGC-----------GUUAGG-------------AGGUGGUG- -5'
29053 5' -58.7 NC_006146.1 + 14257 0.66 0.826153
Target:  5'- gUCCAGGGguCCUCGaggaagaggccCAGUCCacucagccccgugUCCACUGCc -3'
miRNA:   3'- -AGGUCCC--GGAGC-----------GUUAGG-------------AGGUGGUG- -5'
29053 5' -58.7 NC_006146.1 + 19339 0.66 0.826153
Target:  5'- cCCGGccugcccGGCCUCGCuccgggcgCCUCCucggguucaGCCGCu -3'
miRNA:   3'- aGGUC-------CCGGAGCGuua-----GGAGG---------UGGUG- -5'
29053 5' -58.7 NC_006146.1 + 13183 0.66 0.826153
Target:  5'- cCCGGccugcccGGCCUCGCuccgggcgCCUCCucggguucaGCCGCu -3'
miRNA:   3'- aGGUC-------CCGGAGCGuua-----GGAGG---------UGGUG- -5'
29053 5' -58.7 NC_006146.1 + 25495 0.66 0.826153
Target:  5'- cCCGGccugcccGGCCUCGCuccgggcgCCUCCucggguucaGCCGCu -3'
miRNA:   3'- aGGUC-------CCGGAGCGuua-----GGAGG---------UGGUG- -5'
29053 5' -58.7 NC_006146.1 + 17335 0.66 0.826153
Target:  5'- gUCCAGGGguCCUCGaggaagaggccCAGUCCacucagccccgugUCCACUGCc -3'
miRNA:   3'- -AGGUCCC--GGAGC-----------GUUAGG-------------AGGUGGUG- -5'
29053 5' -58.7 NC_006146.1 + 20413 0.66 0.826153
Target:  5'- gUCCAGGGguCCUCGaggaagaggccCAGUCCacucagccccgugUCCACUGCc -3'
miRNA:   3'- -AGGUCCC--GGAGC-----------GUUAGG-------------AGGUGGUG- -5'
29053 5' -58.7 NC_006146.1 + 16261 0.66 0.826153
Target:  5'- cCCGGccugcccGGCCUCGCuccgggcgCCUCCucggguucaGCCGCu -3'
miRNA:   3'- aGGUC-------CCGGAGCGuua-----GGAGG---------UGGUG- -5'
29053 5' -58.7 NC_006146.1 + 23491 0.66 0.826153
Target:  5'- gUCCAGGGguCCUCGaggaagaggccCAGUCCacucagccccgugUCCACUGCc -3'
miRNA:   3'- -AGGUCCC--GGAGC-----------GUUAGG-------------AGGUGGUG- -5'
29053 5' -58.7 NC_006146.1 + 28573 0.66 0.826153
Target:  5'- cCCGGccugcccGGCCUCGCuccgggcgCCUCCucggguucaGCCGCu -3'
miRNA:   3'- aGGUC-------CCGGAGCGuua-----GGAGG---------UGGUG- -5'
29053 5' -58.7 NC_006146.1 + 22417 0.66 0.826153
Target:  5'- cCCGGccugcccGGCCUCGCuccgggcgCCUCCucggguucaGCCGCu -3'
miRNA:   3'- aGGUC-------CCGGAGCGuua-----GGAGG---------UGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.