miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29053 5' -58.7 NC_006146.1 + 76296 0.66 0.826983
Target:  5'- aCguGGGCUggaCGCGGcucuUCCUCUcCCACg -3'
miRNA:   3'- aGguCCCGGa--GCGUU----AGGAGGuGGUG- -5'
29053 5' -58.7 NC_006146.1 + 56750 0.66 0.796078
Target:  5'- cCCAGGGCCagcaugCGCcuGGUCCggagCCucauccgacaugaacACCACg -3'
miRNA:   3'- aGGUCCCGGa-----GCG--UUAGGa---GG---------------UGGUG- -5'
29053 5' -58.7 NC_006146.1 + 117371 0.66 0.792523
Target:  5'- cCCucGGuCCUCGCGG-CCUUCACaCGCg -3'
miRNA:   3'- aGGucCC-GGAGCGUUaGGAGGUG-GUG- -5'
29053 5' -58.7 NC_006146.1 + 71163 0.66 0.792523
Target:  5'- uUCCGauGGGUC-CGC-GUCCUCggagCACCGCg -3'
miRNA:   3'- -AGGU--CCCGGaGCGuUAGGAG----GUGGUG- -5'
29053 5' -58.7 NC_006146.1 + 84752 0.66 0.792523
Target:  5'- --aGGGGCCUCuCAcUCCgaggCCuACCACg -3'
miRNA:   3'- aggUCCCGGAGcGUuAGGa---GG-UGGUG- -5'
29053 5' -58.7 NC_006146.1 + 116076 0.66 0.783539
Target:  5'- uUCCAGauuuGGCC-CGC---CCUCCGCCGg -3'
miRNA:   3'- -AGGUC----CCGGaGCGuuaGGAGGUGGUg -5'
29053 5' -58.7 NC_006146.1 + 69316 0.66 0.780818
Target:  5'- gUUCuGGGCCUCGUcGUUggcuccaacuccagCUCCACCGu -3'
miRNA:   3'- -AGGuCCCGGAGCGuUAG--------------GAGGUGGUg -5'
29053 5' -58.7 NC_006146.1 + 149980 0.66 0.780818
Target:  5'- gCCAGGGCCU-GCAggucggccggacucAgggCCUCCACgAa -3'
miRNA:   3'- aGGUCCCGGAgCGU--------------Ua--GGAGGUGgUg -5'
29053 5' -58.7 NC_006146.1 + 53907 0.66 0.783539
Target:  5'- gUCCAGGGCC-CGC-----UCCACgCGCu -3'
miRNA:   3'- -AGGUCCCGGaGCGuuaggAGGUG-GUG- -5'
29053 5' -58.7 NC_006146.1 + 103437 0.66 0.798729
Target:  5'- aCCGGGGCUUCGCGGagcacaugcgcaccUaCUUCACCcGCg -3'
miRNA:   3'- aGGUCCCGGAGCGUU--------------AgGAGGUGG-UG- -5'
29053 5' -58.7 NC_006146.1 + 61614 0.66 0.801368
Target:  5'- gCCGGGGCCga--GAUcCCUCCcaGCUACg -3'
miRNA:   3'- aGGUCCCGGagcgUUA-GGAGG--UGGUG- -5'
29053 5' -58.7 NC_006146.1 + 81066 0.66 0.801368
Target:  5'- cUCCAGuuucGCCUaGUAcUCCUCCACCu- -3'
miRNA:   3'- -AGGUCc---CGGAgCGUuAGGAGGUGGug -5'
29053 5' -58.7 NC_006146.1 + 42398 0.66 0.826983
Target:  5'- cCCAGGGCCaccccgaCGCcGUCCUCgAagGCg -3'
miRNA:   3'- aGGUCCCGGa------GCGuUAGGAGgUggUG- -5'
29053 5' -58.7 NC_006146.1 + 3275 0.66 0.826983
Target:  5'- gCC-GGGCCcCGCGGgaccccccCCUCCGCCc- -3'
miRNA:   3'- aGGuCCCGGaGCGUUa-------GGAGGUGGug -5'
29053 5' -58.7 NC_006146.1 + 2343 0.66 0.826983
Target:  5'- gCC-GGGCCcCGCGGgaccccccCCUCCGCCc- -3'
miRNA:   3'- aGGuCCCGGaGCGUUa-------GGAGGUGGug -5'
29053 5' -58.7 NC_006146.1 + 1411 0.66 0.826983
Target:  5'- gCC-GGGCCcCGCGGgaccccccCCUCCGCCc- -3'
miRNA:   3'- aGGuCCCGGaGCGUUa-------GGAGGUGGug -5'
29053 5' -58.7 NC_006146.1 + 480 0.66 0.826983
Target:  5'- gCC-GGGCCcCGCGGgaccccccCCUCCGCCc- -3'
miRNA:   3'- aGGuCCCGGaGCGUUa-------GGAGGUGGug -5'
29053 5' -58.7 NC_006146.1 + 43516 0.66 0.810064
Target:  5'- gUCC-GGGCCagGCug-CCggCCACCAUc -3'
miRNA:   3'- -AGGuCCCGGagCGuuaGGa-GGUGGUG- -5'
29053 5' -58.7 NC_006146.1 + 125905 0.66 0.810064
Target:  5'- --uGGGGCCUCaccgaGCuggagagaagGGUCCggCCACCGCg -3'
miRNA:   3'- aggUCCCGGAG-----CG----------UUAGGa-GGUGGUG- -5'
29053 5' -58.7 NC_006146.1 + 121346 0.66 0.810064
Target:  5'- gCCAugcuGGGCCUgGCcggcguggCCUCCGCCc- -3'
miRNA:   3'- aGGU----CCCGGAgCGuua-----GGAGGUGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.