miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29053 5' -58.7 NC_006146.1 + 47413 0.66 0.818605
Target:  5'- gCCAGGGCCa-GCcucagcUCCUCCauGCCGu -3'
miRNA:   3'- aGGUCCCGGagCGuu----AGGAGG--UGGUg -5'
29053 5' -58.7 NC_006146.1 + 53489 0.66 0.818605
Target:  5'- gUCAGGGCCgggggUGCGGUCUggcUCUggcugcggGCCGCg -3'
miRNA:   3'- aGGUCCCGGa----GCGUUAGG---AGG--------UGGUG- -5'
29053 5' -58.7 NC_006146.1 + 121346 0.66 0.810064
Target:  5'- gCCAugcuGGGCCUgGCcggcguggCCUCCGCCc- -3'
miRNA:   3'- aGGU----CCCGGAgCGuua-----GGAGGUGGug -5'
29053 5' -58.7 NC_006146.1 + 125905 0.66 0.810064
Target:  5'- --uGGGGCCUCaccgaGCuggagagaagGGUCCggCCACCGCg -3'
miRNA:   3'- aggUCCCGGAG-----CG----------UUAGGa-GGUGGUG- -5'
29053 5' -58.7 NC_006146.1 + 43516 0.66 0.810064
Target:  5'- gUCC-GGGCCagGCug-CCggCCACCAUc -3'
miRNA:   3'- -AGGuCCCGGagCGuuaGGa-GGUGGUG- -5'
29053 5' -58.7 NC_006146.1 + 32149 0.66 0.810064
Target:  5'- gCCAGGGCCgUgGCAggCCgcucagCUcaGCCACc -3'
miRNA:   3'- aGGUCCCGG-AgCGUuaGGa-----GG--UGGUG- -5'
29053 5' -58.7 NC_006146.1 + 162893 0.66 0.810064
Target:  5'- -gCAGu-CCUCGCAGUCCUgCCGCgCGCc -3'
miRNA:   3'- agGUCccGGAGCGUUAGGA-GGUG-GUG- -5'
29053 5' -58.7 NC_006146.1 + 39097 0.66 0.801368
Target:  5'- gCCAGGGCCauuucCGCGAgcgCaUCC-CCGCu -3'
miRNA:   3'- aGGUCCCGGa----GCGUUa--GgAGGuGGUG- -5'
29053 5' -58.7 NC_006146.1 + 81066 0.66 0.801368
Target:  5'- cUCCAGuuucGCCUaGUAcUCCUCCACCu- -3'
miRNA:   3'- -AGGUCc---CGGAgCGUuAGGAGGUGGug -5'
29053 5' -58.7 NC_006146.1 + 61614 0.66 0.801368
Target:  5'- gCCGGGGCCga--GAUcCCUCCcaGCUACg -3'
miRNA:   3'- aGGUCCCGGagcgUUA-GGAGG--UGGUG- -5'
29053 5' -58.7 NC_006146.1 + 129203 0.66 0.801368
Target:  5'- aUCCGGGaCCUUGCGcgCCagCACC-Cg -3'
miRNA:   3'- -AGGUCCcGGAGCGUuaGGagGUGGuG- -5'
29053 5' -58.7 NC_006146.1 + 119694 0.66 0.801368
Target:  5'- aCCccGGCCUCGUGGaugcCCUgUACCACg -3'
miRNA:   3'- aGGucCCGGAGCGUUa---GGAgGUGGUG- -5'
29053 5' -58.7 NC_006146.1 + 103437 0.66 0.798729
Target:  5'- aCCGGGGCUUCGCGGagcacaugcgcaccUaCUUCACCcGCg -3'
miRNA:   3'- aGGUCCCGGAGCGUU--------------AgGAGGUGG-UG- -5'
29053 5' -58.7 NC_006146.1 + 56750 0.66 0.796078
Target:  5'- cCCAGGGCCagcaugCGCcuGGUCCggagCCucauccgacaugaacACCACg -3'
miRNA:   3'- aGGUCCCGGa-----GCG--UUAGGa---GG---------------UGGUG- -5'
29053 5' -58.7 NC_006146.1 + 157488 0.66 0.796078
Target:  5'- aCCGggcGGGCCUUGCAgaccuggcugaggcaGUCCgUgGCCGCg -3'
miRNA:   3'- aGGU---CCCGGAGCGU---------------UAGGaGgUGGUG- -5'
29053 5' -58.7 NC_006146.1 + 71163 0.66 0.792523
Target:  5'- uUCCGauGGGUC-CGC-GUCCUCggagCACCGCg -3'
miRNA:   3'- -AGGU--CCCGGaGCGuUAGGAG----GUGGUG- -5'
29053 5' -58.7 NC_006146.1 + 120846 0.66 0.792523
Target:  5'- uUCCuggAGGGCCUgcuggacugCGCcucCCUCCugCGCc -3'
miRNA:   3'- -AGG---UCCCGGA---------GCGuuaGGAGGugGUG- -5'
29053 5' -58.7 NC_006146.1 + 126557 0.66 0.792523
Target:  5'- cCCGGGGCC-CGCGGUCaCggaCUAUCGa -3'
miRNA:   3'- aGGUCCCGGaGCGUUAG-Ga--GGUGGUg -5'
29053 5' -58.7 NC_006146.1 + 84752 0.66 0.792523
Target:  5'- --aGGGGCCUCuCAcUCCgaggCCuACCACg -3'
miRNA:   3'- aggUCCCGGAGcGUuAGGa---GG-UGGUG- -5'
29053 5' -58.7 NC_006146.1 + 117371 0.66 0.792523
Target:  5'- cCCucGGuCCUCGCGG-CCUUCACaCGCg -3'
miRNA:   3'- aGGucCC-GGAGCGUUaGGAGGUG-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.