Results 21 - 40 of 180 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29053 | 5' | -58.7 | NC_006146.1 | + | 47413 | 0.66 | 0.818605 |
Target: 5'- gCCAGGGCCa-GCcucagcUCCUCCauGCCGu -3' miRNA: 3'- aGGUCCCGGagCGuu----AGGAGG--UGGUg -5' |
|||||||
29053 | 5' | -58.7 | NC_006146.1 | + | 53489 | 0.66 | 0.818605 |
Target: 5'- gUCAGGGCCgggggUGCGGUCUggcUCUggcugcggGCCGCg -3' miRNA: 3'- aGGUCCCGGa----GCGUUAGG---AGG--------UGGUG- -5' |
|||||||
29053 | 5' | -58.7 | NC_006146.1 | + | 121346 | 0.66 | 0.810064 |
Target: 5'- gCCAugcuGGGCCUgGCcggcguggCCUCCGCCc- -3' miRNA: 3'- aGGU----CCCGGAgCGuua-----GGAGGUGGug -5' |
|||||||
29053 | 5' | -58.7 | NC_006146.1 | + | 125905 | 0.66 | 0.810064 |
Target: 5'- --uGGGGCCUCaccgaGCuggagagaagGGUCCggCCACCGCg -3' miRNA: 3'- aggUCCCGGAG-----CG----------UUAGGa-GGUGGUG- -5' |
|||||||
29053 | 5' | -58.7 | NC_006146.1 | + | 43516 | 0.66 | 0.810064 |
Target: 5'- gUCC-GGGCCagGCug-CCggCCACCAUc -3' miRNA: 3'- -AGGuCCCGGagCGuuaGGa-GGUGGUG- -5' |
|||||||
29053 | 5' | -58.7 | NC_006146.1 | + | 32149 | 0.66 | 0.810064 |
Target: 5'- gCCAGGGCCgUgGCAggCCgcucagCUcaGCCACc -3' miRNA: 3'- aGGUCCCGG-AgCGUuaGGa-----GG--UGGUG- -5' |
|||||||
29053 | 5' | -58.7 | NC_006146.1 | + | 162893 | 0.66 | 0.810064 |
Target: 5'- -gCAGu-CCUCGCAGUCCUgCCGCgCGCc -3' miRNA: 3'- agGUCccGGAGCGUUAGGA-GGUG-GUG- -5' |
|||||||
29053 | 5' | -58.7 | NC_006146.1 | + | 39097 | 0.66 | 0.801368 |
Target: 5'- gCCAGGGCCauuucCGCGAgcgCaUCC-CCGCu -3' miRNA: 3'- aGGUCCCGGa----GCGUUa--GgAGGuGGUG- -5' |
|||||||
29053 | 5' | -58.7 | NC_006146.1 | + | 81066 | 0.66 | 0.801368 |
Target: 5'- cUCCAGuuucGCCUaGUAcUCCUCCACCu- -3' miRNA: 3'- -AGGUCc---CGGAgCGUuAGGAGGUGGug -5' |
|||||||
29053 | 5' | -58.7 | NC_006146.1 | + | 61614 | 0.66 | 0.801368 |
Target: 5'- gCCGGGGCCga--GAUcCCUCCcaGCUACg -3' miRNA: 3'- aGGUCCCGGagcgUUA-GGAGG--UGGUG- -5' |
|||||||
29053 | 5' | -58.7 | NC_006146.1 | + | 129203 | 0.66 | 0.801368 |
Target: 5'- aUCCGGGaCCUUGCGcgCCagCACC-Cg -3' miRNA: 3'- -AGGUCCcGGAGCGUuaGGagGUGGuG- -5' |
|||||||
29053 | 5' | -58.7 | NC_006146.1 | + | 119694 | 0.66 | 0.801368 |
Target: 5'- aCCccGGCCUCGUGGaugcCCUgUACCACg -3' miRNA: 3'- aGGucCCGGAGCGUUa---GGAgGUGGUG- -5' |
|||||||
29053 | 5' | -58.7 | NC_006146.1 | + | 103437 | 0.66 | 0.798729 |
Target: 5'- aCCGGGGCUUCGCGGagcacaugcgcaccUaCUUCACCcGCg -3' miRNA: 3'- aGGUCCCGGAGCGUU--------------AgGAGGUGG-UG- -5' |
|||||||
29053 | 5' | -58.7 | NC_006146.1 | + | 56750 | 0.66 | 0.796078 |
Target: 5'- cCCAGGGCCagcaugCGCcuGGUCCggagCCucauccgacaugaacACCACg -3' miRNA: 3'- aGGUCCCGGa-----GCG--UUAGGa---GG---------------UGGUG- -5' |
|||||||
29053 | 5' | -58.7 | NC_006146.1 | + | 157488 | 0.66 | 0.796078 |
Target: 5'- aCCGggcGGGCCUUGCAgaccuggcugaggcaGUCCgUgGCCGCg -3' miRNA: 3'- aGGU---CCCGGAGCGU---------------UAGGaGgUGGUG- -5' |
|||||||
29053 | 5' | -58.7 | NC_006146.1 | + | 71163 | 0.66 | 0.792523 |
Target: 5'- uUCCGauGGGUC-CGC-GUCCUCggagCACCGCg -3' miRNA: 3'- -AGGU--CCCGGaGCGuUAGGAG----GUGGUG- -5' |
|||||||
29053 | 5' | -58.7 | NC_006146.1 | + | 120846 | 0.66 | 0.792523 |
Target: 5'- uUCCuggAGGGCCUgcuggacugCGCcucCCUCCugCGCc -3' miRNA: 3'- -AGG---UCCCGGA---------GCGuuaGGAGGugGUG- -5' |
|||||||
29053 | 5' | -58.7 | NC_006146.1 | + | 126557 | 0.66 | 0.792523 |
Target: 5'- cCCGGGGCC-CGCGGUCaCggaCUAUCGa -3' miRNA: 3'- aGGUCCCGGaGCGUUAG-Ga--GGUGGUg -5' |
|||||||
29053 | 5' | -58.7 | NC_006146.1 | + | 84752 | 0.66 | 0.792523 |
Target: 5'- --aGGGGCCUCuCAcUCCgaggCCuACCACg -3' miRNA: 3'- aggUCCCGGAGcGUuAGGa---GG-UGGUG- -5' |
|||||||
29053 | 5' | -58.7 | NC_006146.1 | + | 117371 | 0.66 | 0.792523 |
Target: 5'- cCCucGGuCCUCGCGG-CCUUCACaCGCg -3' miRNA: 3'- aGGucCC-GGAGCGUUaGGAGGUG-GUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home