miRNA display CGI


Results 1 - 20 of 278 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29054 3' -58 NC_006146.1 + 165993 0.66 0.867425
Target:  5'- gACAGcGAGGGuCCGGCuCUgucaCCA-GGCg -3'
miRNA:   3'- -UGUCuCUCCU-GGCCGuGGa---GGUuCCG- -5'
29054 3' -58 NC_006146.1 + 157547 0.66 0.867425
Target:  5'- cGCGGuGAGGGaggaGGUgGCCUCCGcguAGGCc -3'
miRNA:   3'- -UGUCuCUCCUgg--CCG-UGGAGGU---UCCG- -5'
29054 3' -58 NC_006146.1 + 159889 0.66 0.867425
Target:  5'- cGCAGAGGGccucgaGGCCGGgGCC-CUcgaagauggGGGGCa -3'
miRNA:   3'- -UGUCUCUC------CUGGCCgUGGaGG---------UUCCG- -5'
29054 3' -58 NC_006146.1 + 64247 0.66 0.867425
Target:  5'- -gGGAGAGGA-CGGC-CCUgaCCAgccggccgcagcAGGCg -3'
miRNA:   3'- ugUCUCUCCUgGCCGuGGA--GGU------------UCCG- -5'
29054 3' -58 NC_006146.1 + 130018 0.66 0.867425
Target:  5'- cGCAGAcGAGGccCCGGCuccgUCUCCGgaccgcgagccGGGCc -3'
miRNA:   3'- -UGUCU-CUCCu-GGCCGu---GGAGGU-----------UCCG- -5'
29054 3' -58 NC_006146.1 + 124604 0.66 0.867425
Target:  5'- -aAGAGGGGcucgagcucgACCGcCGCCaCCGGGGCu -3'
miRNA:   3'- ugUCUCUCC----------UGGCcGUGGaGGUUCCG- -5'
29054 3' -58 NC_006146.1 + 118061 0.66 0.867425
Target:  5'- gGCGGGGGcGGcggcgGCuCGGC-CCUCCGcauccuGGGCa -3'
miRNA:   3'- -UGUCUCU-CC-----UG-GCCGuGGAGGU------UCCG- -5'
29054 3' -58 NC_006146.1 + 77289 0.66 0.867425
Target:  5'- cCGGGGAGGACa-GCAgCC-CCAGGaGCc -3'
miRNA:   3'- uGUCUCUCCUGgcCGU-GGaGGUUC-CG- -5'
29054 3' -58 NC_006146.1 + 10285 0.66 0.867425
Target:  5'- cGCGGAGcuGGcauGCCaGGCggccgACCUCgGGGGCa -3'
miRNA:   3'- -UGUCUCu-CC---UGG-CCG-----UGGAGgUUCCG- -5'
29054 3' -58 NC_006146.1 + 157794 0.66 0.86001
Target:  5'- -aGGAGAGG-CCGG-ACC-CCGccuGGCg -3'
miRNA:   3'- ugUCUCUCCuGGCCgUGGaGGUu--CCG- -5'
29054 3' -58 NC_006146.1 + 2054 0.66 0.86001
Target:  5'- -aAGAGAGGGCCcgagaguuGGC-CCUCgucGGCa -3'
miRNA:   3'- ugUCUCUCCUGG--------CCGuGGAGguuCCG- -5'
29054 3' -58 NC_006146.1 + 128812 0.66 0.86001
Target:  5'- cACAGGGAGGGgCGGCGgCa--GAGGg -3'
miRNA:   3'- -UGUCUCUCCUgGCCGUgGaggUUCCg -5'
29054 3' -58 NC_006146.1 + 22948 0.66 0.86001
Target:  5'- cCAGGGAugaaGGCCGGCugcuAUCUCCu-GGCg -3'
miRNA:   3'- uGUCUCUc---CUGGCCG----UGGAGGuuCCG- -5'
29054 3' -58 NC_006146.1 + 139459 0.66 0.86001
Target:  5'- cCGGGGGGGuGCCuGCACuggagaagguCUCCAcGGCa -3'
miRNA:   3'- uGUCUCUCC-UGGcCGUG----------GAGGUuCCG- -5'
29054 3' -58 NC_006146.1 + 145483 0.66 0.86001
Target:  5'- -aGGAGAGG-CCGG-ACC-CCGccuGGCg -3'
miRNA:   3'- ugUCUCUCCuGGCCgUGGaGGUu--CCG- -5'
29054 3' -58 NC_006146.1 + 148561 0.66 0.86001
Target:  5'- -aGGAGAGG-CCGG-ACC-CCGccuGGCg -3'
miRNA:   3'- ugUCUCUCCuGGCCgUGGaGGUu--CCG- -5'
29054 3' -58 NC_006146.1 + 151639 0.66 0.86001
Target:  5'- -aGGAGAGG-CCGG-ACC-CCGccuGGCg -3'
miRNA:   3'- ugUCUCUCCuGGCCgUGGaGGUu--CCG- -5'
29054 3' -58 NC_006146.1 + 154716 0.66 0.86001
Target:  5'- -aGGAGAGG-CCGG-ACC-CCGccuGGCg -3'
miRNA:   3'- ugUCUCUCCuGGCCgUGGaGGUu--CCG- -5'
29054 3' -58 NC_006146.1 + 142405 0.66 0.86001
Target:  5'- -aGGAGAGG-CCGG-ACC-CCGccuGGCg -3'
miRNA:   3'- ugUCUCUCCuGGCCgUGGaGGUu--CCG- -5'
29054 3' -58 NC_006146.1 + 41268 0.66 0.859258
Target:  5'- gACGGAGccGACCGGgGCgucagguaggugCUCCAcggugagGGGCa -3'
miRNA:   3'- -UGUCUCucCUGGCCgUG------------GAGGU-------UCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.