Results 1 - 20 of 278 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29054 | 3' | -58 | NC_006146.1 | + | 157547 | 0.66 | 0.867425 |
Target: 5'- cGCGGuGAGGGaggaGGUgGCCUCCGcguAGGCc -3' miRNA: 3'- -UGUCuCUCCUgg--CCG-UGGAGGU---UCCG- -5' |
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29054 | 3' | -58 | NC_006146.1 | + | 22948 | 0.66 | 0.86001 |
Target: 5'- cCAGGGAugaaGGCCGGCugcuAUCUCCu-GGCg -3' miRNA: 3'- uGUCUCUc---CUGGCCG----UGGAGGuuCCG- -5' |
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29054 | 3' | -58 | NC_006146.1 | + | 128812 | 0.66 | 0.86001 |
Target: 5'- cACAGGGAGGGgCGGCGgCa--GAGGg -3' miRNA: 3'- -UGUCUCUCCUgGCCGUgGaggUUCCg -5' |
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29054 | 3' | -58 | NC_006146.1 | + | 41268 | 0.66 | 0.859258 |
Target: 5'- gACGGAGccGACCGGgGCgucagguaggugCUCCAcggugagGGGCa -3' miRNA: 3'- -UGUCUCucCUGGCCgUG------------GAGGU-------UCCG- -5' |
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29054 | 3' | -58 | NC_006146.1 | + | 14806 | 0.66 | 0.844591 |
Target: 5'- -aGGAGAGG-CCGGCcggGCCggaggAGGGCa -3' miRNA: 3'- ugUCUCUCCuGGCCG---UGGagg--UUCCG- -5' |
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29054 | 3' | -58 | NC_006146.1 | + | 161426 | 0.66 | 0.844591 |
Target: 5'- cCAGGcGGGugUGGCcCCgcgggaacCCAAGGCg -3' miRNA: 3'- uGUCUcUCCugGCCGuGGa-------GGUUCCG- -5' |
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29054 | 3' | -58 | NC_006146.1 | + | 84375 | 0.66 | 0.844591 |
Target: 5'- cUAGGcGuGGACCgGGCggccaucaugGCCUCCGguAGGCa -3' miRNA: 3'- uGUCU-CuCCUGG-CCG----------UGGAGGU--UCCG- -5' |
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29054 | 3' | -58 | NC_006146.1 | + | 73159 | 0.66 | 0.844591 |
Target: 5'- uGCAGuaggguGAGGcGCCccaGCACCUCCc-GGCa -3' miRNA: 3'- -UGUCu-----CUCC-UGGc--CGUGGAGGuuCCG- -5' |
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29054 | 3' | -58 | NC_006146.1 | + | 25763 | 0.66 | 0.8366 |
Target: 5'- cAUAGAGAuaGuGACCGGCcagaGCCUggCCcAGGCc -3' miRNA: 3'- -UGUCUCU--C-CUGGCCG----UGGA--GGuUCCG- -5' |
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29054 | 3' | -58 | NC_006146.1 | + | 139459 | 0.66 | 0.86001 |
Target: 5'- cCGGGGGGGuGCCuGCACuggagaagguCUCCAcGGCa -3' miRNA: 3'- uGUCUCUCC-UGGcCGUG----------GAGGUuCCG- -5' |
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29054 | 3' | -58 | NC_006146.1 | + | 142405 | 0.66 | 0.86001 |
Target: 5'- -aGGAGAGG-CCGG-ACC-CCGccuGGCg -3' miRNA: 3'- ugUCUCUCCuGGCCgUGGaGGUu--CCG- -5' |
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29054 | 3' | -58 | NC_006146.1 | + | 145483 | 0.66 | 0.86001 |
Target: 5'- -aGGAGAGG-CCGG-ACC-CCGccuGGCg -3' miRNA: 3'- ugUCUCUCCuGGCCgUGGaGGUu--CCG- -5' |
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29054 | 3' | -58 | NC_006146.1 | + | 124604 | 0.66 | 0.867425 |
Target: 5'- -aAGAGGGGcucgagcucgACCGcCGCCaCCGGGGCu -3' miRNA: 3'- ugUCUCUCC----------UGGCcGUGGaGGUUCCG- -5' |
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29054 | 3' | -58 | NC_006146.1 | + | 118061 | 0.66 | 0.867425 |
Target: 5'- gGCGGGGGcGGcggcgGCuCGGC-CCUCCGcauccuGGGCa -3' miRNA: 3'- -UGUCUCU-CC-----UG-GCCGuGGAGGU------UCCG- -5' |
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29054 | 3' | -58 | NC_006146.1 | + | 77289 | 0.66 | 0.867425 |
Target: 5'- cCGGGGAGGACa-GCAgCC-CCAGGaGCc -3' miRNA: 3'- uGUCUCUCCUGgcCGU-GGaGGUUC-CG- -5' |
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29054 | 3' | -58 | NC_006146.1 | + | 10285 | 0.66 | 0.867425 |
Target: 5'- cGCGGAGcuGGcauGCCaGGCggccgACCUCgGGGGCa -3' miRNA: 3'- -UGUCUCu-CC---UGG-CCG-----UGGAGgUUCCG- -5' |
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29054 | 3' | -58 | NC_006146.1 | + | 157794 | 0.66 | 0.86001 |
Target: 5'- -aGGAGAGG-CCGG-ACC-CCGccuGGCg -3' miRNA: 3'- ugUCUCUCCuGGCCgUGGaGGUu--CCG- -5' |
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29054 | 3' | -58 | NC_006146.1 | + | 154716 | 0.66 | 0.86001 |
Target: 5'- -aGGAGAGG-CCGG-ACC-CCGccuGGCg -3' miRNA: 3'- ugUCUCUCCuGGCCgUGGaGGUu--CCG- -5' |
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29054 | 3' | -58 | NC_006146.1 | + | 151639 | 0.66 | 0.86001 |
Target: 5'- -aGGAGAGG-CCGG-ACC-CCGccuGGCg -3' miRNA: 3'- ugUCUCUCCuGGCCgUGGaGGUu--CCG- -5' |
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29054 | 3' | -58 | NC_006146.1 | + | 148561 | 0.66 | 0.86001 |
Target: 5'- -aGGAGAGG-CCGG-ACC-CCGccuGGCg -3' miRNA: 3'- ugUCUCUCCuGGCCgUGGaGGUu--CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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