miRNA display CGI


Results 21 - 40 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29054 3' -58 NC_006146.1 + 169306 0.75 0.386465
Target:  5'- gGCGGGGGgucGGGCgGGCAUgCUCCGGGGUa -3'
miRNA:   3'- -UGUCUCU---CCUGgCCGUG-GAGGUUCCG- -5'
29054 3' -58 NC_006146.1 + 42546 0.74 0.403059
Target:  5'- -gGGAGGGGGCCuguccguccgucGGCuucAUCUCCAGGGCc -3'
miRNA:   3'- ugUCUCUCCUGG------------CCG---UGGAGGUUCCG- -5'
29054 3' -58 NC_006146.1 + 46710 0.74 0.411523
Target:  5'- -aAGAGucGGCCgcGGCGgCUCCGAGGCg -3'
miRNA:   3'- ugUCUCucCUGG--CCGUgGAGGUUCCG- -5'
29054 3' -58 NC_006146.1 + 95521 0.74 0.420097
Target:  5'- -gGGAGcugucGGGugCGGCGCCUggCCAGGGUc -3'
miRNA:   3'- ugUCUC-----UCCugGCCGUGGA--GGUUCCG- -5'
29054 3' -58 NC_006146.1 + 42378 0.74 0.428778
Target:  5'- cCAGGGuGGGCgaggGGCGCC-CCAGGGCc -3'
miRNA:   3'- uGUCUCuCCUGg---CCGUGGaGGUUCCG- -5'
29054 3' -58 NC_006146.1 + 149601 0.74 0.428778
Target:  5'- -gGGAGAGGagGCUGGcCGCCUCCuuuacccGGGCg -3'
miRNA:   3'- ugUCUCUCC--UGGCC-GUGGAGGu------UCCG- -5'
29054 3' -58 NC_006146.1 + 125809 0.73 0.437563
Target:  5'- cCGGAGAauGGCCGGCAcCCUCCcucuccccacGAGGCa -3'
miRNA:   3'- uGUCUCUc-CUGGCCGU-GGAGG----------UUCCG- -5'
29054 3' -58 NC_006146.1 + 55040 0.73 0.437563
Target:  5'- -gGGGGucGGGGCCGGgGCCUgCCAcAGGCg -3'
miRNA:   3'- ugUCUC--UCCUGGCCgUGGA-GGU-UCCG- -5'
29054 3' -58 NC_006146.1 + 167575 0.73 0.446451
Target:  5'- cGCGGAGAGGccguguguggagGCCGG-GCCUCCccugGGGGCc -3'
miRNA:   3'- -UGUCUCUCC------------UGGCCgUGGAGG----UUCCG- -5'
29054 3' -58 NC_006146.1 + 169439 0.73 0.446451
Target:  5'- cGCGGAGAGGccguguguggagGCCGG-GCCUCCccugGGGGCc -3'
miRNA:   3'- -UGUCUCUCC------------UGGCCgUGGAGG----UUCCG- -5'
29054 3' -58 NC_006146.1 + 170370 0.73 0.446451
Target:  5'- cGCGGAGAGGccguguguggagGCCGG-GCCUCCccugGGGGCc -3'
miRNA:   3'- -UGUCUCUCC------------UGGCCgUGGAGG----UUCCG- -5'
29054 3' -58 NC_006146.1 + 168507 0.73 0.446451
Target:  5'- cGCGGAGAGGccguguguggagGCCGG-GCCUCCccugGGGGCc -3'
miRNA:   3'- -UGUCUCUCC------------UGGCCgUGGAGG----UUCCG- -5'
29054 3' -58 NC_006146.1 + 147486 0.73 0.455439
Target:  5'- gGCAaAGGGGGCUcagagGGCACCUacUCGAGGCa -3'
miRNA:   3'- -UGUcUCUCCUGG-----CCGUGGA--GGUUCCG- -5'
29054 3' -58 NC_006146.1 + 153642 0.73 0.455439
Target:  5'- gGCAaAGGGGGCUcagagGGCACCUacUCGAGGCa -3'
miRNA:   3'- -UGUcUCUCCUGG-----CCGUGGA--GGUUCCG- -5'
29054 3' -58 NC_006146.1 + 156719 0.73 0.455439
Target:  5'- gGCAaAGGGGGCUcagagGGCACCUacUCGAGGCa -3'
miRNA:   3'- -UGUcUCUCCUGG-----CCGUGGA--GGUUCCG- -5'
29054 3' -58 NC_006146.1 + 150564 0.73 0.455439
Target:  5'- gGCAaAGGGGGCUcagagGGCACCUacUCGAGGCa -3'
miRNA:   3'- -UGUcUCUCCUGG-----CCGUGGA--GGUUCCG- -5'
29054 3' -58 NC_006146.1 + 144408 0.73 0.455439
Target:  5'- gGCAaAGGGGGCUcagagGGCACCUacUCGAGGCa -3'
miRNA:   3'- -UGUcUCUCCUGG-----CCGUGGA--GGUUCCG- -5'
29054 3' -58 NC_006146.1 + 141330 0.73 0.455439
Target:  5'- gGCAaAGGGGGCUcagagGGCACCUacUCGAGGCa -3'
miRNA:   3'- -UGUcUCUCCUGG-----CCGUGGA--GGUUCCG- -5'
29054 3' -58 NC_006146.1 + 131225 0.73 0.473701
Target:  5'- uGCAGGcccAGGAgcCCGcCGCCUCCAAGGCc -3'
miRNA:   3'- -UGUCUc--UCCU--GGCcGUGGAGGUUCCG- -5'
29054 3' -58 NC_006146.1 + 51731 0.73 0.473701
Target:  5'- cAUGGGGAGG--CGGCGCC-CCGAGGUg -3'
miRNA:   3'- -UGUCUCUCCugGCCGUGGaGGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.