miRNA display CGI


Results 21 - 40 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29054 3' -58 NC_006146.1 + 53466 0.66 0.852397
Target:  5'- --cGGGAGGcGCgGGUGCCUCgucgguCAGGGCc -3'
miRNA:   3'- uguCUCUCC-UGgCCGUGGAG------GUUCCG- -5'
29054 3' -58 NC_006146.1 + 52800 0.66 0.852397
Target:  5'- uGCAGuG-GGACUGGUugCa-CGAGGCc -3'
miRNA:   3'- -UGUCuCuCCUGGCCGugGagGUUCCG- -5'
29054 3' -58 NC_006146.1 + 39305 0.66 0.852397
Target:  5'- aGCAGAGGccuguguacuGGGCuCGGCugGCCUCCccGGGa -3'
miRNA:   3'- -UGUCUCU----------CCUG-GCCG--UGGAGGu-UCCg -5'
29054 3' -58 NC_006146.1 + 63632 0.66 0.852397
Target:  5'- aACGcGuGGGGAUgGGCACC-CgGGGGUg -3'
miRNA:   3'- -UGU-CuCUCCUGgCCGUGGaGgUUCCG- -5'
29054 3' -58 NC_006146.1 + 159324 0.66 0.844591
Target:  5'- gUAGuuGAGGcugGCCGGCgucucgugcgccGCCUCCAGcauGGCg -3'
miRNA:   3'- uGUCu-CUCC---UGGCCG------------UGGAGGUU---CCG- -5'
29054 3' -58 NC_006146.1 + 126076 0.66 0.844591
Target:  5'- gGCAcGAGGGGcGCCGGC-CC-CCuacaGAGGUc -3'
miRNA:   3'- -UGU-CUCUCC-UGGCCGuGGaGG----UUCCG- -5'
29054 3' -58 NC_006146.1 + 161426 0.66 0.844591
Target:  5'- cCAGGcGGGugUGGCcCCgcgggaacCCAAGGCg -3'
miRNA:   3'- uGUCUcUCCugGCCGuGGa-------GGUUCCG- -5'
29054 3' -58 NC_006146.1 + 84375 0.66 0.844591
Target:  5'- cUAGGcGuGGACCgGGCggccaucaugGCCUCCGguAGGCa -3'
miRNA:   3'- uGUCU-CuCCUGG-CCG----------UGGAGGU--UCCG- -5'
29054 3' -58 NC_006146.1 + 14806 0.66 0.844591
Target:  5'- -aGGAGAGG-CCGGCcggGCCggaggAGGGCa -3'
miRNA:   3'- ugUCUCUCCuGGCCG---UGGagg--UUCCG- -5'
29054 3' -58 NC_006146.1 + 73159 0.66 0.844591
Target:  5'- uGCAGuaggguGAGGcGCCccaGCACCUCCc-GGCa -3'
miRNA:   3'- -UGUCu-----CUCC-UGGc--CGUGGAGGuuCCG- -5'
29054 3' -58 NC_006146.1 + 132616 0.66 0.8366
Target:  5'- gAUGGAaAGGGCCGGCAguguggccCgCUCCAgauguuccAGGCa -3'
miRNA:   3'- -UGUCUcUCCUGGCCGU--------G-GAGGU--------UCCG- -5'
29054 3' -58 NC_006146.1 + 28751 0.66 0.8366
Target:  5'- uCAGAGGGGAgCcGC-CCUcggggcCCAGGGCc -3'
miRNA:   3'- uGUCUCUCCUgGcCGuGGA------GGUUCCG- -5'
29054 3' -58 NC_006146.1 + 22595 0.66 0.8366
Target:  5'- uCAGAGGGGAgCcGC-CCUcggggcCCAGGGCc -3'
miRNA:   3'- uGUCUCUCCUgGcCGuGGA------GGUUCCG- -5'
29054 3' -58 NC_006146.1 + 25763 0.66 0.8366
Target:  5'- cAUAGAGAuaGuGACCGGCcagaGCCUggCCcAGGCc -3'
miRNA:   3'- -UGUCUCU--C-CUGGCCG----UGGA--GGuUCCG- -5'
29054 3' -58 NC_006146.1 + 16439 0.66 0.8366
Target:  5'- uCAGAGGGGAgCcGC-CCUcggggcCCAGGGCc -3'
miRNA:   3'- uGUCUCUCCUgGcCGuGGA------GGUUCCG- -5'
29054 3' -58 NC_006146.1 + 13361 0.66 0.8366
Target:  5'- uCAGAGGGGAgCcGC-CCUcggggcCCAGGGCc -3'
miRNA:   3'- uGUCUCUCCUgGcCGuGGA------GGUUCCG- -5'
29054 3' -58 NC_006146.1 + 19517 0.66 0.8366
Target:  5'- uCAGAGGGGAgCcGC-CCUcggggcCCAGGGCc -3'
miRNA:   3'- uGUCUCUCCUgGcCGuGGA------GGUUCCG- -5'
29054 3' -58 NC_006146.1 + 25673 0.66 0.8366
Target:  5'- uCAGAGGGGAgCcGC-CCUcggggcCCAGGGCc -3'
miRNA:   3'- uGUCUCUCCUgGcCGuGGA------GGUUCCG- -5'
29054 3' -58 NC_006146.1 + 76394 0.66 0.8366
Target:  5'- -gGGGGAgGGACCGGgGgCgCCGAcGGCg -3'
miRNA:   3'- ugUCUCU-CCUGGCCgUgGaGGUU-CCG- -5'
29054 3' -58 NC_006146.1 + 22285 0.66 0.8366
Target:  5'- gACAGGGAGGgu-GGCaugcaaaguGCCUCUuGGGCu -3'
miRNA:   3'- -UGUCUCUCCuggCCG---------UGGAGGuUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.