miRNA display CGI


Results 41 - 60 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29054 3' -58 NC_006146.1 + 25673 0.66 0.8366
Target:  5'- uCAGAGGGGAgCcGC-CCUcggggcCCAGGGCc -3'
miRNA:   3'- uGUCUCUCCUgGcCGuGGA------GGUUCCG- -5'
29054 3' -58 NC_006146.1 + 149989 0.66 0.82843
Target:  5'- uGCAG-GucGGCCGGacucaggGCCUCCAcgaAGGCc -3'
miRNA:   3'- -UGUCuCucCUGGCCg------UGGAGGU---UCCG- -5'
29054 3' -58 NC_006146.1 + 10668 0.66 0.82843
Target:  5'- gACGGGGAGGcCCGGgGCgauacCCGcGGGCa -3'
miRNA:   3'- -UGUCUCUCCuGGCCgUGga---GGU-UCCG- -5'
29054 3' -58 NC_006146.1 + 21414 0.66 0.82843
Target:  5'- uCAGAGAGGGCaGGguCC-CCAugGGGg -3'
miRNA:   3'- uGUCUCUCCUGgCCguGGaGGU--UCCg -5'
29054 3' -58 NC_006146.1 + 14767 0.66 0.82843
Target:  5'- gGCAGGcGGGGCUcgGGCACCUgUu-GGCg -3'
miRNA:   3'- -UGUCUcUCCUGG--CCGUGGAgGuuCCG- -5'
29054 3' -58 NC_006146.1 + 122018 0.66 0.82843
Target:  5'- gACAGAaaGAGGcgcagGCCuGGCGCCUggaggCCGAcGGCu -3'
miRNA:   3'- -UGUCU--CUCC-----UGG-CCGUGGA-----GGUU-CCG- -5'
29054 3' -58 NC_006146.1 + 11416 0.66 0.82843
Target:  5'- aGCAGAGccugcAGGACCaGGC-CaagguggCCAAGGUg -3'
miRNA:   3'- -UGUCUC-----UCCUGG-CCGuGga-----GGUUCCG- -5'
29054 3' -58 NC_006146.1 + 53594 0.66 0.82843
Target:  5'- gGCAGGGAugccggggaaaGGGCgCGGCACCgggCCGu-GCa -3'
miRNA:   3'- -UGUCUCU-----------CCUG-GCCGUGGa--GGUucCG- -5'
29054 3' -58 NC_006146.1 + 116012 0.66 0.827603
Target:  5'- aGCAaAGAGcuccuccGGCCGGUuaaagGCCUCCAcGGCc -3'
miRNA:   3'- -UGUcUCUC-------CUGGCCG-----UGGAGGUuCCG- -5'
29054 3' -58 NC_006146.1 + 49673 0.66 0.827603
Target:  5'- gGCAGGGGGGcuauGgCGGCGucguccuCCUCCAcccucuccagGGGCc -3'
miRNA:   3'- -UGUCUCUCC----UgGCCGU-------GGAGGU----------UCCG- -5'
29054 3' -58 NC_006146.1 + 48021 0.66 0.827603
Target:  5'- gGCGGGGGaggcacggcGGGCCGGCucggguCgUCCAgcgccccGGGCa -3'
miRNA:   3'- -UGUCUCU---------CCUGGCCGu-----GgAGGU-------UCCG- -5'
29054 3' -58 NC_006146.1 + 97734 0.66 0.825944
Target:  5'- uGCcGGGAGGugCuggGGCGCCucacccuacugcacUCCAAGuGCa -3'
miRNA:   3'- -UGuCUCUCCugG---CCGUGG--------------AGGUUC-CG- -5'
29054 3' -58 NC_006146.1 + 134171 0.67 0.820087
Target:  5'- -aAGAgGGGGGCCuGCACg-CCGAGGUu -3'
miRNA:   3'- ugUCU-CUCCUGGcCGUGgaGGUUCCG- -5'
29054 3' -58 NC_006146.1 + 96162 0.67 0.820087
Target:  5'- ---cGGAGG-CUGGCucacugggucCCUCCAGGGCc -3'
miRNA:   3'- ugucUCUCCuGGCCGu---------GGAGGUUCCG- -5'
29054 3' -58 NC_006146.1 + 40881 0.67 0.820087
Target:  5'- cCGGAGAcGGAgCCGGgGCCucgucugcgaUCCGGGcGCg -3'
miRNA:   3'- uGUCUCU-CCU-GGCCgUGG----------AGGUUC-CG- -5'
29054 3' -58 NC_006146.1 + 12798 0.67 0.820087
Target:  5'- uGCAGGGGcGGACguacggacggCGGCugCcggugcgcaugUCCAAGGUg -3'
miRNA:   3'- -UGUCUCU-CCUG----------GCCGugG-----------AGGUUCCG- -5'
29054 3' -58 NC_006146.1 + 165813 0.67 0.820087
Target:  5'- cUAGGGGGGcguccCUGGCcgcguggacGCCUCCAAcGGCc -3'
miRNA:   3'- uGUCUCUCCu----GGCCG---------UGGAGGUU-CCG- -5'
29054 3' -58 NC_006146.1 + 12399 0.67 0.820087
Target:  5'- uCAGGGAcguGGACgCGGCGgUggacgCCGAGGUg -3'
miRNA:   3'- uGUCUCU---CCUG-GCCGUgGa----GGUUCCG- -5'
29054 3' -58 NC_006146.1 + 44399 0.67 0.820087
Target:  5'- -uGGGGccGGGCaCGGCGCCUUCcucgaGGGGCu -3'
miRNA:   3'- ugUCUCu-CCUG-GCCGUGGAGG-----UUCCG- -5'
29054 3' -58 NC_006146.1 + 129593 0.67 0.817552
Target:  5'- aACAGGGAGGgacgccaugccuccGCCgucuccgucgccGGguCCUCCGcGGGCg -3'
miRNA:   3'- -UGUCUCUCC--------------UGG------------CCguGGAGGU-UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.