miRNA display CGI


Results 1 - 20 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29054 3' -58 NC_006146.1 + 522 0.68 0.738568
Target:  5'- -aGGGGAGGcCCGGCcuccacacacgGCCUCUccgcGGGCc -3'
miRNA:   3'- ugUCUCUCCuGGCCG-----------UGGAGGu---UCCG- -5'
29054 3' -58 NC_006146.1 + 1453 0.68 0.738568
Target:  5'- -aGGGGAGGcCCGGCcuccacacacgGCCUCUccgcGGGCc -3'
miRNA:   3'- ugUCUCUCCuGGCCG-----------UGGAGGu---UCCG- -5'
29054 3' -58 NC_006146.1 + 2054 0.66 0.86001
Target:  5'- -aAGAGAGGGCCcgagaguuGGC-CCUCgucGGCa -3'
miRNA:   3'- ugUCUCUCCUGG--------CCGuGGAGguuCCG- -5'
29054 3' -58 NC_006146.1 + 2385 0.68 0.738568
Target:  5'- -aGGGGAGGcCCGGCcuccacacacgGCCUCUccgcGGGCc -3'
miRNA:   3'- ugUCUCUCCuGGCCG-----------UGGAGGu---UCCG- -5'
29054 3' -58 NC_006146.1 + 3317 0.68 0.738568
Target:  5'- -aGGGGAGGcCCGGCcuccacacacgGCCUCUccgcGGGCc -3'
miRNA:   3'- ugUCUCUCCuGGCCG-----------UGGAGGu---UCCG- -5'
29054 3' -58 NC_006146.1 + 4866 0.68 0.719248
Target:  5'- gGCAGGGgcgGGGGCCacaGGCACCcCCGAuGCc -3'
miRNA:   3'- -UGUCUC---UCCUGG---CCGUGGaGGUUcCG- -5'
29054 3' -58 NC_006146.1 + 10285 0.66 0.867425
Target:  5'- cGCGGAGcuGGcauGCCaGGCggccgACCUCgGGGGCa -3'
miRNA:   3'- -UGUCUCu-CC---UGG-CCG-----UGGAGgUUCCG- -5'
29054 3' -58 NC_006146.1 + 10668 0.66 0.82843
Target:  5'- gACGGGGAGGcCCGGgGCgauacCCGcGGGCa -3'
miRNA:   3'- -UGUCUCUCCuGGCCgUGga---GGU-UCCG- -5'
29054 3' -58 NC_006146.1 + 11416 0.66 0.82843
Target:  5'- aGCAGAGccugcAGGACCaGGC-CaagguggCCAAGGUg -3'
miRNA:   3'- -UGUCUC-----UCCUGG-CCGuGga-----GGUUCCG- -5'
29054 3' -58 NC_006146.1 + 12399 0.67 0.820087
Target:  5'- uCAGGGAcguGGACgCGGCGgUggacgCCGAGGUg -3'
miRNA:   3'- uGUCUCU---CCUG-GCCGUgGa----GGUUCCG- -5'
29054 3' -58 NC_006146.1 + 12697 0.69 0.669842
Target:  5'- aGCAGAGAGGAaguagaGGC-CCgcggCCAuugGGGCc -3'
miRNA:   3'- -UGUCUCUCCUgg----CCGuGGa---GGU---UCCG- -5'
29054 3' -58 NC_006146.1 + 12798 0.67 0.820087
Target:  5'- uGCAGGGGcGGACguacggacggCGGCugCcggugcgcaugUCCAAGGUg -3'
miRNA:   3'- -UGUCUCU-CCUG----------GCCGugG-----------AGGUUCCG- -5'
29054 3' -58 NC_006146.1 + 13110 0.71 0.589648
Target:  5'- cCAGGcGGGGuCCGGCcUCUCCuGGGGCa -3'
miRNA:   3'- uGUCU-CUCCuGGCCGuGGAGG-UUCCG- -5'
29054 3' -58 NC_006146.1 + 13258 0.72 0.501762
Target:  5'- cCAGggggaaccAGGGGACCGGCGCC-CCAGaGCc -3'
miRNA:   3'- uGUC--------UCUCCUGGCCGUGGaGGUUcCG- -5'
29054 3' -58 NC_006146.1 + 13361 0.66 0.8366
Target:  5'- uCAGAGGGGAgCcGC-CCUcggggcCCAGGGCc -3'
miRNA:   3'- uGUCUCUCCUgGcCGuGGA------GGUUCCG- -5'
29054 3' -58 NC_006146.1 + 13568 0.7 0.629733
Target:  5'- cCAGAGAcucucccucgcGGACaGGgGCCUCCcAGGGCc -3'
miRNA:   3'- uGUCUCU-----------CCUGgCCgUGGAGG-UUCCG- -5'
29054 3' -58 NC_006146.1 + 14389 0.68 0.766855
Target:  5'- cUAGGGccGGGAgaGGCAgCC-CCGAGGCg -3'
miRNA:   3'- uGUCUC--UCCUggCCGU-GGaGGUUCCG- -5'
29054 3' -58 NC_006146.1 + 14767 0.66 0.82843
Target:  5'- gGCAGGcGGGGCUcgGGCACCUgUu-GGCg -3'
miRNA:   3'- -UGUCUcUCCUGG--CCGUGGAgGuuCCG- -5'
29054 3' -58 NC_006146.1 + 14806 0.66 0.844591
Target:  5'- -aGGAGAGG-CCGGCcggGCCggaggAGGGCa -3'
miRNA:   3'- ugUCUCUCCuGGCCG---UGGagg--UUCCG- -5'
29054 3' -58 NC_006146.1 + 15027 0.72 0.511277
Target:  5'- cCAGGGAGG---GGCGCCUggCCAGGGCc -3'
miRNA:   3'- uGUCUCUCCuggCCGUGGA--GGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.