miRNA display CGI


Results 21 - 40 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29054 3' -58 NC_006146.1 + 15422 0.67 0.785151
Target:  5'- uCAGAGGGGcuggcCCGGCugCagUCCugccuGGCg -3'
miRNA:   3'- uGUCUCUCCu----GGCCGugG--AGGuu---CCG- -5'
29054 3' -58 NC_006146.1 + 15578 0.67 0.802917
Target:  5'- --uGGGAGGACaGGCGCgUCgGcgaGGGCg -3'
miRNA:   3'- uguCUCUCCUGgCCGUGgAGgU---UCCG- -5'
29054 3' -58 NC_006146.1 + 15776 0.69 0.669842
Target:  5'- aGCAGAGAGGAaguagaGGC-CCgcggCCAuugGGGCc -3'
miRNA:   3'- -UGUCUCUCCUgg----CCGuGGa---GGU---UCCG- -5'
29054 3' -58 NC_006146.1 + 16188 0.71 0.589648
Target:  5'- cCAGGcGGGGuCCGGCcUCUCCuGGGGCa -3'
miRNA:   3'- uGUCU-CUCCuGGCCGuGGAGG-UUCCG- -5'
29054 3' -58 NC_006146.1 + 16336 0.72 0.501762
Target:  5'- cCAGggggaaccAGGGGACCGGCGCC-CCAGaGCc -3'
miRNA:   3'- uGUC--------UCUCCUGGCCGUGGaGGUUcCG- -5'
29054 3' -58 NC_006146.1 + 16439 0.66 0.8366
Target:  5'- uCAGAGGGGAgCcGC-CCUcggggcCCAGGGCc -3'
miRNA:   3'- uGUCUCUCCUgGcCGuGGA------GGUUCCG- -5'
29054 3' -58 NC_006146.1 + 16646 0.7 0.629733
Target:  5'- cCAGAGAcucucccucgcGGACaGGgGCCUCCcAGGGCc -3'
miRNA:   3'- uGUCUCU-----------CCUGgCCgUGGAGG-UUCCG- -5'
29054 3' -58 NC_006146.1 + 17447 0.69 0.67882
Target:  5'- gGCAGgcGGAGGgcaacaacacaacACCGGCcCCUCCAAaGCc -3'
miRNA:   3'- -UGUC--UCUCC-------------UGGCCGuGGAGGUUcCG- -5'
29054 3' -58 NC_006146.1 + 17467 0.68 0.766855
Target:  5'- cUAGGGccGGGAgaGGCAgCC-CCGAGGCg -3'
miRNA:   3'- uGUCUC--UCCUggCCGU-GGaGGUUCCG- -5'
29054 3' -58 NC_006146.1 + 18854 0.69 0.669842
Target:  5'- aGCAGAGAGGAaguagaGGC-CCgcggCCAuugGGGCc -3'
miRNA:   3'- -UGUCUCUCCUgg----CCGuGGa---GGU---UCCG- -5'
29054 3' -58 NC_006146.1 + 19266 0.71 0.589648
Target:  5'- cCAGGcGGGGuCCGGCcUCUCCuGGGGCa -3'
miRNA:   3'- uGUCU-CUCCuGGCCGuGGAGG-UUCCG- -5'
29054 3' -58 NC_006146.1 + 19414 0.72 0.501762
Target:  5'- cCAGggggaaccAGGGGACCGGCGCC-CCAGaGCc -3'
miRNA:   3'- uGUC--------UCUCCUGGCCGUGGaGGUUcCG- -5'
29054 3' -58 NC_006146.1 + 19517 0.66 0.8366
Target:  5'- uCAGAGGGGAgCcGC-CCUcggggcCCAGGGCc -3'
miRNA:   3'- uGUCUCUCCUgGcCGuGGA------GGUUCCG- -5'
29054 3' -58 NC_006146.1 + 19724 0.7 0.629733
Target:  5'- cCAGAGAcucucccucgcGGACaGGgGCCUCCcAGGGCc -3'
miRNA:   3'- uGUCUCU-----------CCUGgCCgUGGAGG-UUCCG- -5'
29054 3' -58 NC_006146.1 + 20115 0.68 0.766855
Target:  5'- gACAcGGuGGcCCGGCACCUgCuggGGGCc -3'
miRNA:   3'- -UGUcUCuCCuGGCCGUGGAgGu--UCCG- -5'
29054 3' -58 NC_006146.1 + 20545 0.68 0.766855
Target:  5'- cUAGGGccGGGAgaGGCAgCC-CCGAGGCg -3'
miRNA:   3'- uGUCUC--UCCUggCCGU-GGaGGUUCCG- -5'
29054 3' -58 NC_006146.1 + 21350 0.68 0.738568
Target:  5'- uCGGAGGGGcuGCCGGCggGCUUCCugccGGUc -3'
miRNA:   3'- uGUCUCUCC--UGGCCG--UGGAGGuu--CCG- -5'
29054 3' -58 NC_006146.1 + 21414 0.66 0.82843
Target:  5'- uCAGAGAGGGCaGGguCC-CCAugGGGg -3'
miRNA:   3'- uGUCUCUCCUGgCCguGGaGGU--UCCg -5'
29054 3' -58 NC_006146.1 + 21932 0.7 0.629733
Target:  5'- aGCAGAGAGGAaguagaGGC-CCgcgCCAuugGGGCc -3'
miRNA:   3'- -UGUCUCUCCUgg----CCGuGGa--GGU---UCCG- -5'
29054 3' -58 NC_006146.1 + 22285 0.66 0.8366
Target:  5'- gACAGGGAGGgu-GGCaugcaaaguGCCUCUuGGGCu -3'
miRNA:   3'- -UGUCUCUCCuggCCG---------UGGAGGuUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.