miRNA display CGI


Results 1 - 20 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29054 3' -58 NC_006146.1 + 170671 0.68 0.748098
Target:  5'- cGCGGGGGaGGCCaggGGCGCC-CCGGGGa -3'
miRNA:   3'- -UGUCUCUcCUGG---CCGUGGaGGUUCCg -5'
29054 3' -58 NC_006146.1 + 170418 0.72 0.517983
Target:  5'- gGCGGAGGGGGgggucccgcggggcCCGGCGCgUgCCGGGGg -3'
miRNA:   3'- -UGUCUCUCCU--------------GGCCGUGgA-GGUUCCg -5'
29054 3' -58 NC_006146.1 + 170370 0.73 0.446451
Target:  5'- cGCGGAGAGGccguguguggagGCCGG-GCCUCCccugGGGGCc -3'
miRNA:   3'- -UGUCUCUCC------------UGGCCgUGGAGG----UUCCG- -5'
29054 3' -58 NC_006146.1 + 170306 0.68 0.766855
Target:  5'- -gGGGGcAGGGCUGGCGCCgggCCGcgcccccGGCc -3'
miRNA:   3'- ugUCUC-UCCUGGCCGUGGa--GGUu------CCG- -5'
29054 3' -58 NC_006146.1 + 170237 0.75 0.386465
Target:  5'- gGCGGGGGgucGGGCgGGCAUgCUCCGGGGUa -3'
miRNA:   3'- -UGUCUCU---CCUGgCCGUG-GAGGUUCCG- -5'
29054 3' -58 NC_006146.1 + 170193 0.69 0.709477
Target:  5'- -gAGGGcGGGGCCGGgGCCUggCgGGGGCc -3'
miRNA:   3'- ugUCUC-UCCUGGCCgUGGA--GgUUCCG- -5'
29054 3' -58 NC_006146.1 + 170093 0.76 0.339462
Target:  5'- gGCGGGaGGGGCCGGCGCCgcagggggggCCGgcgGGGCg -3'
miRNA:   3'- -UGUCUcUCCUGGCCGUGGa---------GGU---UCCG- -5'
29054 3' -58 NC_006146.1 + 170058 0.67 0.81158
Target:  5'- uCGGGGAGGGcCCGGgGCCgcgCguGGGg -3'
miRNA:   3'- uGUCUCUCCU-GGCCgUGGa--GguUCCg -5'
29054 3' -58 NC_006146.1 + 169975 0.69 0.679816
Target:  5'- gACGG-GAGG-CCGGCGCgCgcCCGGGGUc -3'
miRNA:   3'- -UGUCuCUCCuGGCCGUG-Ga-GGUUCCG- -5'
29054 3' -58 NC_006146.1 + 169487 0.72 0.517983
Target:  5'- gGCGGAGGGGGgggucccgcggggcCCGGCGCgUgCCGGGGg -3'
miRNA:   3'- -UGUCUCUCCU--------------GGCCGUGgA-GGUUCCg -5'
29054 3' -58 NC_006146.1 + 169439 0.73 0.446451
Target:  5'- cGCGGAGAGGccguguguggagGCCGG-GCCUCCccugGGGGCc -3'
miRNA:   3'- -UGUCUCUCC------------UGGCCgUGGAGG----UUCCG- -5'
29054 3' -58 NC_006146.1 + 169375 0.68 0.766855
Target:  5'- -gGGGGcAGGGCUGGCGCCgggCCGcgcccccGGCc -3'
miRNA:   3'- ugUCUC-UCCUGGCCGUGGa--GGUu------CCG- -5'
29054 3' -58 NC_006146.1 + 169306 0.75 0.386465
Target:  5'- gGCGGGGGgucGGGCgGGCAUgCUCCGGGGUa -3'
miRNA:   3'- -UGUCUCU---CCUGgCCGUG-GAGGUUCCG- -5'
29054 3' -58 NC_006146.1 + 169262 0.69 0.709477
Target:  5'- -gAGGGcGGGGCCGGgGCCUggCgGGGGCc -3'
miRNA:   3'- ugUCUC-UCCUGGCCgUGGA--GgUUCCG- -5'
29054 3' -58 NC_006146.1 + 169161 0.82 0.136655
Target:  5'- gGCGGGaGGGGCCGGCGCCUgCAGGGg -3'
miRNA:   3'- -UGUCUcUCCUGGCCGUGGAgGUUCCg -5'
29054 3' -58 NC_006146.1 + 169126 0.67 0.81158
Target:  5'- uCGGGGAGGGcCCGGgGCCgcgCguGGGg -3'
miRNA:   3'- uGUCUCUCCU-GGCCgUGGa--GguUCCg -5'
29054 3' -58 NC_006146.1 + 169043 0.69 0.679816
Target:  5'- gACGG-GAGG-CCGGCGCgCgcCCGGGGUc -3'
miRNA:   3'- -UGUCuCUCCuGGCCGUG-Ga-GGUUCCG- -5'
29054 3' -58 NC_006146.1 + 168555 0.72 0.517983
Target:  5'- gGCGGAGGGGGgggucccgcggggcCCGGCGCgUgCCGGGGg -3'
miRNA:   3'- -UGUCUCUCCU--------------GGCCGUGgA-GGUUCCg -5'
29054 3' -58 NC_006146.1 + 168507 0.73 0.446451
Target:  5'- cGCGGAGAGGccguguguggagGCCGG-GCCUCCccugGGGGCc -3'
miRNA:   3'- -UGUCUCUCC------------UGGCCgUGGAGG----UUCCG- -5'
29054 3' -58 NC_006146.1 + 168443 0.68 0.766855
Target:  5'- -gGGGGcAGGGCUGGCGCCgggCCGcgcccccGGCc -3'
miRNA:   3'- ugUCUC-UCCUGGCCGUGGa--GGUu------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.