miRNA display CGI


Results 1 - 20 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29054 3' -58 NC_006146.1 + 92923 1.1 0.001761
Target:  5'- gACAGAGAGGACCGGCACCUCCAAGGCc -3'
miRNA:   3'- -UGUCUCUCCUGGCCGUGGAGGUUCCG- -5'
29054 3' -58 NC_006146.1 + 95521 0.74 0.420097
Target:  5'- -gGGAGcugucGGGugCGGCGCCUggCCAGGGUc -3'
miRNA:   3'- ugUCUC-----UCCugGCCGUGGA--GGUUCCG- -5'
29054 3' -58 NC_006146.1 + 55040 0.73 0.437563
Target:  5'- -gGGGGucGGGGCCGGgGCCUgCCAcAGGCg -3'
miRNA:   3'- ugUCUC--UCCUGGCCgUGGA-GGU-UCCG- -5'
29054 3' -58 NC_006146.1 + 157547 0.66 0.867425
Target:  5'- cGCGGuGAGGGaggaGGUgGCCUCCGcguAGGCc -3'
miRNA:   3'- -UGUCuCUCCUgg--CCG-UGGAGGU---UCCG- -5'
29054 3' -58 NC_006146.1 + 51885 0.78 0.250554
Target:  5'- -aAGAGGGGAggguggaggcugcgUCGGCggggGCCUCCGAGGCa -3'
miRNA:   3'- ugUCUCUCCU--------------GGCCG----UGGAGGUUCCG- -5'
29054 3' -58 NC_006146.1 + 114975 0.78 0.25233
Target:  5'- gGCAGAGAGGGCgGGgaaCGCCUCCugGAGGa -3'
miRNA:   3'- -UGUCUCUCCUGgCC---GUGGAGG--UUCCg -5'
29054 3' -58 NC_006146.1 + 70595 0.76 0.310505
Target:  5'- cGCAGGGGGGgaACCuGUGCCUCCAcGGCc -3'
miRNA:   3'- -UGUCUCUCC--UGGcCGUGGAGGUuCCG- -5'
29054 3' -58 NC_006146.1 + 170093 0.76 0.339462
Target:  5'- gGCGGGaGGGGCCGGCGCCgcagggggggCCGgcgGGGCg -3'
miRNA:   3'- -UGUCUcUCCUGGCCGUGGa---------GGU---UCCG- -5'
29054 3' -58 NC_006146.1 + 45524 0.75 0.386465
Target:  5'- cACGGuGGGGGCCuGgGCCUCCuuGGGCu -3'
miRNA:   3'- -UGUCuCUCCUGGcCgUGGAGGu-UCCG- -5'
29054 3' -58 NC_006146.1 + 46710 0.74 0.411523
Target:  5'- -aAGAGucGGCCgcGGCGgCUCCGAGGCg -3'
miRNA:   3'- ugUCUCucCUGG--CCGUgGAGGUUCCG- -5'
29054 3' -58 NC_006146.1 + 168374 0.75 0.386465
Target:  5'- gGCGGGGGgucGGGCgGGCAUgCUCCGGGGUa -3'
miRNA:   3'- -UGUCUCU---CCUGgCCGUG-GAGGUUCCG- -5'
29054 3' -58 NC_006146.1 + 164520 0.75 0.378339
Target:  5'- ---aAGAGGACCGGUACCaaacggaccCCAGGGCc -3'
miRNA:   3'- ugucUCUCCUGGCCGUGGa--------GGUUCCG- -5'
29054 3' -58 NC_006146.1 + 167297 0.82 0.136655
Target:  5'- gGCGGGaGGGGCCGGCGCCUgCAGGGg -3'
miRNA:   3'- -UGUCUcUCCUGGCCGUGGAgGUUCCg -5'
29054 3' -58 NC_006146.1 + 169306 0.75 0.386465
Target:  5'- gGCGGGGGgucGGGCgGGCAUgCUCCGGGGUa -3'
miRNA:   3'- -UGUCUCU---CCUGgCCGUG-GAGGUUCCG- -5'
29054 3' -58 NC_006146.1 + 168229 0.82 0.136655
Target:  5'- gGCGGGaGGGGCCGGCGCCUgCAGGGg -3'
miRNA:   3'- -UGUCUcUCCUGGCCGUGGAgGUUCCg -5'
29054 3' -58 NC_006146.1 + 114234 0.75 0.354659
Target:  5'- cCAG-GGGGcCCGGCACCUCagggAGGGCc -3'
miRNA:   3'- uGUCuCUCCuGGCCGUGGAGg---UUCCG- -5'
29054 3' -58 NC_006146.1 + 170237 0.75 0.386465
Target:  5'- gGCGGGGGgucGGGCgGGCAUgCUCCGGGGUa -3'
miRNA:   3'- -UGUCUCU---CCUGgCCGUG-GAGGUUCCG- -5'
29054 3' -58 NC_006146.1 + 149601 0.74 0.428778
Target:  5'- -gGGAGAGGagGCUGGcCGCCUCCuuuacccGGGCg -3'
miRNA:   3'- ugUCUCUCC--UGGCC-GUGGAGGu------UCCG- -5'
29054 3' -58 NC_006146.1 + 169161 0.82 0.136655
Target:  5'- gGCGGGaGGGGCCGGCGCCUgCAGGGg -3'
miRNA:   3'- -UGUCUcUCCUGGCCGUGGAgGUUCCg -5'
29054 3' -58 NC_006146.1 + 160662 0.77 0.283466
Target:  5'- uCAGGGAGGccuucaggGCCGGCACaugaCCAGGGCc -3'
miRNA:   3'- uGUCUCUCC--------UGGCCGUGga--GGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.