Results 1 - 20 of 433 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29054 | 5' | -59.9 | NC_006146.1 | + | 6475 | 0.65 | 0.80913 |
Target: 5'- aCGGCCCacugcaagaaacaGGACCGggUGGUccuuggaugcuccuGACCCuuGg -3' miRNA: 3'- -GCCGGG-------------UCUGGUuuGUCG--------------CUGGGggC- -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 31523 | 0.66 | 0.804028 |
Target: 5'- gGGCCUucuccuACUAAACAGCaggcACCCCCc -3' miRNA: 3'- gCCGGGuc----UGGUUUGUCGc---UGGGGGc -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 81875 | 0.66 | 0.804028 |
Target: 5'- uCGGCCuCAGAcCCAAcauccACGGCaGGCUCCg- -3' miRNA: 3'- -GCCGG-GUCU-GGUU-----UGUCG-CUGGGGgc -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 129131 | 0.66 | 0.804028 |
Target: 5'- gGcGCCCGGGC---GCAG-GGCCUCCGg -3' miRNA: 3'- gC-CGGGUCUGguuUGUCgCUGGGGGC- -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 129911 | 0.66 | 0.804028 |
Target: 5'- -cGCCCuGACCAGACAG-GGCCagCUGc -3' miRNA: 3'- gcCGGGuCUGGUUUGUCgCUGGg-GGC- -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 167066 | 0.66 | 0.804028 |
Target: 5'- aGGUCCGGua-GGGCAGCggggGugCCCCGc -3' miRNA: 3'- gCCGGGUCuggUUUGUCG----CugGGGGC- -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 165956 | 0.66 | 0.804028 |
Target: 5'- uGGCCCcugguccccgGGGCacaGAGCA-CGGCCaCCCGa -3' miRNA: 3'- gCCGGG----------UCUGg--UUUGUcGCUGG-GGGC- -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 155881 | 0.66 | 0.803172 |
Target: 5'- gGGCCCGGGCCuggaaggucCGGUGGCuucgcuugggucuCCCCu -3' miRNA: 3'- gCCGGGUCUGGuuu------GUCGCUG-------------GGGGc -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 117549 | 0.66 | 0.803172 |
Target: 5'- gGGCCagccaAGACCucACGccgccccGCGGCCgCCGg -3' miRNA: 3'- gCCGGg----UCUGGuuUGU-------CGCUGGgGGC- -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 110011 | 0.66 | 0.803172 |
Target: 5'- gGGCCUcaGGGCUccguccugaucaaAGAUGGCcucgcuGACCCCCGg -3' miRNA: 3'- gCCGGG--UCUGG-------------UUUGUCG------CUGGGGGC- -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 45822 | 0.66 | 0.803172 |
Target: 5'- aCGGCCgccucgaAGACgGagacgggGAUGGCGuCCCCCGa -3' miRNA: 3'- -GCCGGg------UCUGgU-------UUGUCGCuGGGGGC- -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 154995 | 0.66 | 0.801457 |
Target: 5'- gGGCCCGGcacagaaguugcugGCuCGAGgcCAGCGAgCCCuCCGg -3' miRNA: 3'- gCCGGGUC--------------UG-GUUU--GUCGCU-GGG-GGC- -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 25789 | 0.66 | 0.801457 |
Target: 5'- uGGCCCAGGCCuucuucaucuacgcCGGgGACCCa-- -3' miRNA: 3'- gCCGGGUCUGGuuu-----------GUCgCUGGGggc -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 130026 | 0.66 | 0.800598 |
Target: 5'- aGGCCCcggcuccgucuccGGACCGcgagccgggccuccAAgAGCG-CCCCCu -3' miRNA: 3'- gCCGGG-------------UCUGGU--------------UUgUCGCuGGGGGc -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 40416 | 0.66 | 0.79541 |
Target: 5'- gGGCaaAGuaGCCAcccggggcGGCAGCGGCCCCg- -3' miRNA: 3'- gCCGggUC--UGGU--------UUGUCGCUGGGGgc -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 117885 | 0.66 | 0.79541 |
Target: 5'- gGGCaCCcgAGGCUGGuCAuCGACCCCCGc -3' miRNA: 3'- gCCG-GG--UCUGGUUuGUcGCUGGGGGC- -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 49761 | 0.66 | 0.79541 |
Target: 5'- gCGGCCCAGGcCCAGACGcCGGCUg--- -3' miRNA: 3'- -GCCGGGUCU-GGUUUGUcGCUGGgggc -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 21590 | 0.66 | 0.79541 |
Target: 5'- gGGCCuCAGGCCcu-CcGCG-UCCCCGu -3' miRNA: 3'- gCCGG-GUCUGGuuuGuCGCuGGGGGC- -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 137849 | 0.66 | 0.79541 |
Target: 5'- gGGCUCGGGgugGGugGGCGugUCCCGg -3' miRNA: 3'- gCCGGGUCUgg-UUugUCGCugGGGGC- -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 24668 | 0.66 | 0.79541 |
Target: 5'- gGGCCuCAGGCCcu-CcGCG-UCCCCGu -3' miRNA: 3'- gCCGG-GUCUGGuuuGuCGCuGGGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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