miRNA display CGI


Results 1 - 20 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29054 5' -59.9 NC_006146.1 + 6475 0.65 0.80913
Target:  5'- aCGGCCCacugcaagaaacaGGACCGggUGGUccuuggaugcuccuGACCCuuGg -3'
miRNA:   3'- -GCCGGG-------------UCUGGUuuGUCG--------------CUGGGggC- -5'
29054 5' -59.9 NC_006146.1 + 2407 0.66 0.786656
Target:  5'- aCGGCCUcuccgcGGGCCuccACAcGUGGCCuCCCa -3'
miRNA:   3'- -GCCGGG------UCUGGuu-UGU-CGCUGG-GGGc -5'
29054 5' -59.9 NC_006146.1 + 1475 0.66 0.786656
Target:  5'- aCGGCCUcuccgcGGGCCuccACAcGUGGCCuCCCa -3'
miRNA:   3'- -GCCGGG------UCUGGuu-UGU-CGCUGG-GGGc -5'
29054 5' -59.9 NC_006146.1 + 544 0.66 0.786656
Target:  5'- aCGGCCUcuccgcGGGCCuccACAcGUGGCCuCCCa -3'
miRNA:   3'- -GCCGGG------UCUGGuu-UGU-CGCUGG-GGGc -5'
29054 5' -59.9 NC_006146.1 + 166548 0.66 0.786656
Target:  5'- gGGCCguGGCCAcgucgcugaagAGCugcucaaagAGCGACCCgCCc -3'
miRNA:   3'- gCCGGguCUGGU-----------UUG---------UCGCUGGG-GGc -5'
29054 5' -59.9 NC_006146.1 + 103581 0.66 0.786656
Target:  5'- gGGCCUGGGCCGGGCucagcGCGGacguggCCCGg -3'
miRNA:   3'- gCCGGGUCUGGUUUGu----CGCUgg----GGGC- -5'
29054 5' -59.9 NC_006146.1 + 134298 0.66 0.777774
Target:  5'- gGGCCCGGGUCAuugguuucuaaAGCuucaGGCCCCCGu -3'
miRNA:   3'- gCCGGGUCUGGU-----------UUGucg-CUGGGGGC- -5'
29054 5' -59.9 NC_006146.1 + 126153 0.66 0.777774
Target:  5'- gGGCCCcGACaaccACAGCcGCCCgCGg -3'
miRNA:   3'- gCCGGGuCUGguu-UGUCGcUGGGgGC- -5'
29054 5' -59.9 NC_006146.1 + 124163 0.66 0.777774
Target:  5'- aGGaCCCuGGCC-AGC-GUGGCCUCCGc -3'
miRNA:   3'- gCC-GGGuCUGGuUUGuCGCUGGGGGC- -5'
29054 5' -59.9 NC_006146.1 + 3339 0.66 0.786656
Target:  5'- aCGGCCUcuccgcGGGCCuccACAcGUGGCCuCCCa -3'
miRNA:   3'- -GCCGGG------UCUGGuu-UGU-CGCUGG-GGGc -5'
29054 5' -59.9 NC_006146.1 + 123702 0.66 0.794541
Target:  5'- gCGGCCagGGGCCuggcgcucgGGGCGGCGGCgggcucuCCCCa -3'
miRNA:   3'- -GCCGGg-UCUGG---------UUUGUCGCUG-------GGGGc -5'
29054 5' -59.9 NC_006146.1 + 40416 0.66 0.79541
Target:  5'- gGGCaaAGuaGCCAcccggggcGGCAGCGGCCCCg- -3'
miRNA:   3'- gCCGggUC--UGGU--------UUGUCGCUGGGGgc -5'
29054 5' -59.9 NC_006146.1 + 81875 0.66 0.804028
Target:  5'- uCGGCCuCAGAcCCAAcauccACGGCaGGCUCCg- -3'
miRNA:   3'- -GCCGG-GUCU-GGUU-----UGUCG-CUGGGGgc -5'
29054 5' -59.9 NC_006146.1 + 165956 0.66 0.804028
Target:  5'- uGGCCCcugguccccgGGGCacaGAGCA-CGGCCaCCCGa -3'
miRNA:   3'- gCCGGG----------UCUGg--UUUGUcGCUGG-GGGC- -5'
29054 5' -59.9 NC_006146.1 + 167066 0.66 0.804028
Target:  5'- aGGUCCGGua-GGGCAGCggggGugCCCCGc -3'
miRNA:   3'- gCCGGGUCuggUUUGUCG----CugGGGGC- -5'
29054 5' -59.9 NC_006146.1 + 155881 0.66 0.803172
Target:  5'- gGGCCCGGGCCuggaaggucCGGUGGCuucgcuugggucuCCCCu -3'
miRNA:   3'- gCCGGGUCUGGuuu------GUCGCUG-------------GGGGc -5'
29054 5' -59.9 NC_006146.1 + 117549 0.66 0.803172
Target:  5'- gGGCCagccaAGACCucACGccgccccGCGGCCgCCGg -3'
miRNA:   3'- gCCGGg----UCUGGuuUGU-------CGCUGGgGGC- -5'
29054 5' -59.9 NC_006146.1 + 25789 0.66 0.801457
Target:  5'- uGGCCCAGGCCuucuucaucuacgcCGGgGACCCa-- -3'
miRNA:   3'- gCCGGGUCUGGuuu-----------GUCgCUGGGggc -5'
29054 5' -59.9 NC_006146.1 + 123801 0.66 0.79541
Target:  5'- uGGCCUucuACgAGACGGCGcaGCCCaCCGu -3'
miRNA:   3'- gCCGGGuc-UGgUUUGUCGC--UGGG-GGC- -5'
29054 5' -59.9 NC_006146.1 + 49761 0.66 0.79541
Target:  5'- gCGGCCCAGGcCCAGACGcCGGCUg--- -3'
miRNA:   3'- -GCCGGGUCU-GGUUUGUcGCUGGgggc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.