miRNA display CGI


Results 1 - 20 of 433 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29054 5' -59.9 NC_006146.1 + 92958 1.09 0.001509
Target:  5'- cCGGCCCAGACCAAACAGCGACCCCCGg -3'
miRNA:   3'- -GCCGGGUCUGGUUUGUCGCUGGGGGC- -5'
29054 5' -59.9 NC_006146.1 + 137327 0.8 0.139809
Target:  5'- ---aCCGGACCAGcgaacGCGGCGACCCCCGg -3'
miRNA:   3'- gccgGGUCUGGUU-----UGUCGCUGGGGGC- -5'
29054 5' -59.9 NC_006146.1 + 136661 0.8 0.15057
Target:  5'- cCGGCCCGGcguCCuuGCGGCGGCCUCCc -3'
miRNA:   3'- -GCCGGGUCu--GGuuUGUCGCUGGGGGc -5'
29054 5' -59.9 NC_006146.1 + 32831 0.8 0.15057
Target:  5'- cCGGCCCGGcguCCuuGCGGCGGCCUCCc -3'
miRNA:   3'- -GCCGGGUCu--GGuuUGUCGCUGGGGGc -5'
29054 5' -59.9 NC_006146.1 + 137540 0.78 0.196712
Target:  5'- gCGGCCCggcGGACCcacCGGCGGCCaCCCGg -3'
miRNA:   3'- -GCCGGG---UCUGGuuuGUCGCUGG-GGGC- -5'
29054 5' -59.9 NC_006146.1 + 3819 0.78 0.196712
Target:  5'- uGGgUCAGGCCAGGCGGgGcACCCCCGc -3'
miRNA:   3'- gCCgGGUCUGGUUUGUCgC-UGGGGGC- -5'
29054 5' -59.9 NC_006146.1 + 137662 0.78 0.196712
Target:  5'- gCGGCCCggcGGACCcgcCGGCGGCCaCCCGg -3'
miRNA:   3'- -GCCGGG---UCUGGuuuGUCGCUGG-GGGC- -5'
29054 5' -59.9 NC_006146.1 + 33321 0.78 0.211286
Target:  5'- cCGGCCCgagcuccaGGACCGGGCAGCGGa-CCCGg -3'
miRNA:   3'- -GCCGGG--------UCUGGUUUGUCGCUggGGGC- -5'
29054 5' -59.9 NC_006146.1 + 26175 0.78 0.211286
Target:  5'- gCGGCCCGGugUgc-CAGCGuCCCCCGc -3'
miRNA:   3'- -GCCGGGUCugGuuuGUCGCuGGGGGC- -5'
29054 5' -59.9 NC_006146.1 + 29253 0.78 0.211286
Target:  5'- gCGGCCCGGugUgc-CAGCGuCCCCCGc -3'
miRNA:   3'- -GCCGGGUCugGuuuGUCGCuGGGGGC- -5'
29054 5' -59.9 NC_006146.1 + 23097 0.78 0.211286
Target:  5'- gCGGCCCGGugUgc-CAGCGuCCCCCGc -3'
miRNA:   3'- -GCCGGGUCugGuuuGUCGCuGGGGGC- -5'
29054 5' -59.9 NC_006146.1 + 13864 0.78 0.211286
Target:  5'- gCGGCCCGGugUgc-CAGCGuCCCCCGc -3'
miRNA:   3'- -GCCGGGUCugGuuuGUCGCuGGGGGC- -5'
29054 5' -59.9 NC_006146.1 + 20019 0.78 0.211286
Target:  5'- gCGGCCCGGugUgc-CAGCGuCCCCCGc -3'
miRNA:   3'- -GCCGGGUCugGuuuGUCGCuGGGGGC- -5'
29054 5' -59.9 NC_006146.1 + 33878 0.77 0.216347
Target:  5'- cCGGCCCcgagcuccaGGACCGGGCAGCGGa-CCCGg -3'
miRNA:   3'- -GCCGGG---------UCUGGUUUGUCGCUggGGGC- -5'
29054 5' -59.9 NC_006146.1 + 34063 0.77 0.216347
Target:  5'- cCGGCCCcgagcuccaGGACCGGGCAGCGGa-CCCGg -3'
miRNA:   3'- -GCCGGG---------UCUGGUUUGUCGCUggGGGC- -5'
29054 5' -59.9 NC_006146.1 + 35736 0.77 0.216347
Target:  5'- cCGGCCCcgagcuccaGGACCGGGCAGCGGa-CCCGg -3'
miRNA:   3'- -GCCGGG---------UCUGGUUUGUCGCUggGGGC- -5'
29054 5' -59.9 NC_006146.1 + 35457 0.77 0.216347
Target:  5'- cCGGCCCcgagcuccaGGACCGGGCAGCGGa-CCCGg -3'
miRNA:   3'- -GCCGGG---------UCUGGUUUGUCGCUggGGGC- -5'
29054 5' -59.9 NC_006146.1 + 35550 0.77 0.216347
Target:  5'- cCGGCCCcgagcuccaGGACCGGGCAGCGGa-CCCGg -3'
miRNA:   3'- -GCCGGG---------UCUGGUUUGUCGCUggGGGC- -5'
29054 5' -59.9 NC_006146.1 + 35643 0.77 0.216347
Target:  5'- cCGGCCCcgagcuccaGGACCGGGCAGCGGa-CCCGg -3'
miRNA:   3'- -GCCGGG---------UCUGGUUUGUCGCUggGGGC- -5'
29054 5' -59.9 NC_006146.1 + 33970 0.77 0.216347
Target:  5'- cCGGCCCcgagcuccaGGACCGGGCAGCGGa-CCCGg -3'
miRNA:   3'- -GCCGGG---------UCUGGUUUGUCGCUggGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.