Results 21 - 40 of 433 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29054 | 5' | -59.9 | NC_006146.1 | + | 15434 | 0.66 | 0.79541 |
Target: 5'- gGGCCuCAGGCCcu-CcGCG-UCCCCGu -3' miRNA: 3'- gCCGG-GUCUGGuuuGuCGCuGGGGGC- -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 153313 | 0.66 | 0.79541 |
Target: 5'- aGGCCCGGGCCA---GGUcGCCCagcauCCGa -3' miRNA: 3'- gCCGGGUCUGGUuugUCGcUGGG-----GGC- -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 123801 | 0.66 | 0.79541 |
Target: 5'- uGGCCUucuACgAGACGGCGcaGCCCaCCGu -3' miRNA: 3'- gCCGGGuc-UGgUUUGUCGC--UGGG-GGC- -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 49761 | 0.66 | 0.79541 |
Target: 5'- gCGGCCCAGGcCCAGACGcCGGCUg--- -3' miRNA: 3'- -GCCGGGUCU-GGUUUGUcGCUGGgggc -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 40416 | 0.66 | 0.79541 |
Target: 5'- gGGCaaAGuaGCCAcccggggcGGCAGCGGCCCCg- -3' miRNA: 3'- gCCGggUC--UGGU--------UUGUCGCUGGGGgc -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 12355 | 0.66 | 0.79541 |
Target: 5'- gGGCCuCAGGCCcu-CcGCG-UCCCCGu -3' miRNA: 3'- gCCGG-GUCUGGuuuGuCGCuGGGGGC- -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 123702 | 0.66 | 0.794541 |
Target: 5'- gCGGCCagGGGCCuggcgcucgGGGCGGCGGCgggcucuCCCCa -3' miRNA: 3'- -GCCGGg-UCUGG---------UUUGUCGCUG-------GGGGc -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 38101 | 0.66 | 0.786656 |
Target: 5'- gCGGCCCGGAgaCAguguacagagaGACAGCGguaggaacacgGCCUCUGa -3' miRNA: 3'- -GCCGGGUCUg-GU-----------UUGUCGC-----------UGGGGGC- -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 44962 | 0.66 | 0.786656 |
Target: 5'- aGGCCCcgggGGACuCGAccGCGGUGGCCggaCCCu -3' miRNA: 3'- gCCGGG----UCUG-GUU--UGUCGCUGG---GGGc -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 31478 | 0.66 | 0.786656 |
Target: 5'- gGGCCUucuccuACUAAACAGCaggcaccuCCCCCGg -3' miRNA: 3'- gCCGGGuc----UGGUUUGUCGcu------GGGGGC- -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 8854 | 0.66 | 0.786656 |
Target: 5'- --aUCCAGGuuAAACAGCcuGCCCCCGc -3' miRNA: 3'- gccGGGUCUggUUUGUCGc-UGGGGGC- -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 3339 | 0.66 | 0.786656 |
Target: 5'- aCGGCCUcuccgcGGGCCuccACAcGUGGCCuCCCa -3' miRNA: 3'- -GCCGGG------UCUGGuu-UGU-CGCUGG-GGGc -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 2407 | 0.66 | 0.786656 |
Target: 5'- aCGGCCUcuccgcGGGCCuccACAcGUGGCCuCCCa -3' miRNA: 3'- -GCCGGG------UCUGGuu-UGU-CGCUGG-GGGc -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 1475 | 0.66 | 0.786656 |
Target: 5'- aCGGCCUcuccgcGGGCCuccACAcGUGGCCuCCCa -3' miRNA: 3'- -GCCGGG------UCUGGuu-UGU-CGCUGG-GGGc -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 544 | 0.66 | 0.786656 |
Target: 5'- aCGGCCUcuccgcGGGCCuccACAcGUGGCCuCCCa -3' miRNA: 3'- -GCCGGG------UCUGGuu-UGU-CGCUGG-GGGc -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 103581 | 0.66 | 0.786656 |
Target: 5'- gGGCCUGGGCCGGGCucagcGCGGacguggCCCGg -3' miRNA: 3'- gCCGGGUCUGGUUUGu----CGCUgg----GGGC- -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 166548 | 0.66 | 0.786656 |
Target: 5'- gGGCCguGGCCAcgucgcugaagAGCugcucaaagAGCGACCCgCCc -3' miRNA: 3'- gCCGGguCUGGU-----------UUG---------UCGCUGGG-GGc -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 148769 | 0.66 | 0.786656 |
Target: 5'- uGaGCCgGGGCgcAACAGCacGAUCCCCGg -3' miRNA: 3'- gC-CGGgUCUGguUUGUCG--CUGGGGGC- -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 92305 | 0.66 | 0.786656 |
Target: 5'- uGGUUCuGACCucGCAGC-ACCCCUc -3' miRNA: 3'- gCCGGGuCUGGuuUGUCGcUGGGGGc -5' |
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29054 | 5' | -59.9 | NC_006146.1 | + | 52892 | 0.66 | 0.786656 |
Target: 5'- gCGGCCCcGAgCCccGCAuggucugcGUGGCCCCCc -3' miRNA: 3'- -GCCGGGuCU-GGuuUGU--------CGCUGGGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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