miRNA display CGI


Results 1 - 20 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29054 5' -59.9 NC_006146.1 + 471 0.7 0.56605
Target:  5'- cCGGCacgcgCCGGGCCccGCGG-GACCCCCc -3'
miRNA:   3'- -GCCG-----GGUCUGGuuUGUCgCUGGGGGc -5'
29054 5' -59.9 NC_006146.1 + 544 0.66 0.786656
Target:  5'- aCGGCCUcuccgcGGGCCuccACAcGUGGCCuCCCa -3'
miRNA:   3'- -GCCGGG------UCUGGuu-UGU-CGCUGG-GGGc -5'
29054 5' -59.9 NC_006146.1 + 705 0.68 0.664106
Target:  5'- uGGCCCccGCCAGGCccCGGCCCCg- -3'
miRNA:   3'- gCCGGGucUGGUUUGucGCUGGGGgc -5'
29054 5' -59.9 NC_006146.1 + 820 0.69 0.614933
Target:  5'- cCGGCCCcucccgccGGCCAuccccACGcGCGGCCCCgGg -3'
miRNA:   3'- -GCCGGGu-------CUGGUu----UGU-CGCUGGGGgC- -5'
29054 5' -59.9 NC_006146.1 + 1402 0.7 0.56605
Target:  5'- cCGGCacgcgCCGGGCCccGCGG-GACCCCCc -3'
miRNA:   3'- -GCCG-----GGUCUGGuuUGUCgCUGGGGGc -5'
29054 5' -59.9 NC_006146.1 + 1475 0.66 0.786656
Target:  5'- aCGGCCUcuccgcGGGCCuccACAcGUGGCCuCCCa -3'
miRNA:   3'- -GCCGGG------UCUGGuu-UGU-CGCUGG-GGGc -5'
29054 5' -59.9 NC_006146.1 + 1488 0.66 0.759656
Target:  5'- uGGCCUccuGACCAuGGCAGCcGGCCUCg- -3'
miRNA:   3'- gCCGGGu--CUGGU-UUGUCG-CUGGGGgc -5'
29054 5' -59.9 NC_006146.1 + 1636 0.68 0.664106
Target:  5'- uGGCCCccGCCAGGCccCGGCCCCg- -3'
miRNA:   3'- gCCGGGucUGGUUUGucGCUGGGGgc -5'
29054 5' -59.9 NC_006146.1 + 1752 0.69 0.614933
Target:  5'- cCGGCCCcucccgccGGCCAuccccACGcGCGGCCCCgGg -3'
miRNA:   3'- -GCCGGGu-------CUGGUu----UGU-CGCUGGGGgC- -5'
29054 5' -59.9 NC_006146.1 + 2171 0.73 0.386664
Target:  5'- aCGGaCCAGACUGGAUGGCcaGACCCUCGa -3'
miRNA:   3'- -GCCgGGUCUGGUUUGUCG--CUGGGGGC- -5'
29054 5' -59.9 NC_006146.1 + 2334 0.7 0.56605
Target:  5'- cCGGCacgcgCCGGGCCccGCGG-GACCCCCc -3'
miRNA:   3'- -GCCG-----GGUCUGGuuUGUCgCUGGGGGc -5'
29054 5' -59.9 NC_006146.1 + 2407 0.66 0.786656
Target:  5'- aCGGCCUcuccgcGGGCCuccACAcGUGGCCuCCCa -3'
miRNA:   3'- -GCCGGG------UCUGGuu-UGU-CGCUGG-GGGc -5'
29054 5' -59.9 NC_006146.1 + 2568 0.68 0.664106
Target:  5'- uGGCCCccGCCAGGCccCGGCCCCg- -3'
miRNA:   3'- gCCGGGucUGGUUUGucGCUGGGGgc -5'
29054 5' -59.9 NC_006146.1 + 2684 0.69 0.614933
Target:  5'- cCGGCCCcucccgccGGCCAuccccACGcGCGGCCCCgGg -3'
miRNA:   3'- -GCCGGGu-------CUGGUu----UGU-CGCUGGGGgC- -5'
29054 5' -59.9 NC_006146.1 + 3157 0.68 0.644457
Target:  5'- cCGGCCCcugcgcccuGAUCGAGCAccuGCGAUCUCUGg -3'
miRNA:   3'- -GCCGGGu--------CUGGUUUGU---CGCUGGGGGC- -5'
29054 5' -59.9 NC_006146.1 + 3266 0.7 0.56605
Target:  5'- cCGGCacgcgCCGGGCCccGCGG-GACCCCCc -3'
miRNA:   3'- -GCCG-----GGUCUGGuuUGUCgCUGGGGGc -5'
29054 5' -59.9 NC_006146.1 + 3339 0.66 0.786656
Target:  5'- aCGGCCUcuccgcGGGCCuccACAcGUGGCCuCCCa -3'
miRNA:   3'- -GCCGGG------UCUGGuu-UGU-CGCUGG-GGGc -5'
29054 5' -59.9 NC_006146.1 + 3500 0.68 0.664106
Target:  5'- uGGCCCccGCCAGGCccCGGCCCCg- -3'
miRNA:   3'- gCCGGGucUGGUUUGucGCUGGGGgc -5'
29054 5' -59.9 NC_006146.1 + 3616 0.69 0.614933
Target:  5'- cCGGCCCcucccgccGGCCAuccccACGcGCGGCCCCgGg -3'
miRNA:   3'- -GCCGGGu-------CUGGUu----UGU-CGCUGGGGgC- -5'
29054 5' -59.9 NC_006146.1 + 3819 0.78 0.196712
Target:  5'- uGGgUCAGGCCAGGCGGgGcACCCCCGc -3'
miRNA:   3'- gCCgGGUCUGGUUUGUCgC-UGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.