miRNA display CGI


Results 1 - 20 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29054 5' -59.9 NC_006146.1 + 92958 1.09 0.001509
Target:  5'- cCGGCCCAGACCAAACAGCGACCCCCGg -3'
miRNA:   3'- -GCCGGGUCUGGUUUGUCGCUGGGGGC- -5'
29054 5' -59.9 NC_006146.1 + 41627 0.74 0.347943
Target:  5'- gGGCCCGGGCgCAGAcCAGCcccacaucccuGACCCUCGc -3'
miRNA:   3'- gCCGGGUCUG-GUUU-GUCG-----------CUGGGGGC- -5'
29054 5' -59.9 NC_006146.1 + 2171 0.73 0.386664
Target:  5'- aCGGaCCAGACUGGAUGGCcaGACCCUCGa -3'
miRNA:   3'- -GCCgGGUCUGGUUUGUCG--CUGGGGGC- -5'
29054 5' -59.9 NC_006146.1 + 81875 0.66 0.804028
Target:  5'- uCGGCCuCAGAcCCAAcauccACGGCaGGCUCCg- -3'
miRNA:   3'- -GCCGG-GUCU-GGUU-----UGUCG-CUGGGGgc -5'
29054 5' -59.9 NC_006146.1 + 23097 0.78 0.211286
Target:  5'- gCGGCCCGGugUgc-CAGCGuCCCCCGc -3'
miRNA:   3'- -GCCGGGUCugGuuuGUCGCuGGGGGC- -5'
29054 5' -59.9 NC_006146.1 + 26175 0.78 0.211286
Target:  5'- gCGGCCCGGugUgc-CAGCGuCCCCCGc -3'
miRNA:   3'- -GCCGGGUCugGuuuGUCGCuGGGGGC- -5'
29054 5' -59.9 NC_006146.1 + 134777 0.77 0.232154
Target:  5'- aGuGCCCAGGCCAcaacccccacccAGCAGCGGguCCCCCu -3'
miRNA:   3'- gC-CGGGUCUGGU------------UUGUCGCU--GGGGGc -5'
29054 5' -59.9 NC_006146.1 + 123360 0.76 0.26668
Target:  5'- aGGCCgcgaggaGGACCGAgGCGGCG-CCCCCGa -3'
miRNA:   3'- gCCGGg------UCUGGUU-UGUCGCuGGGGGC- -5'
29054 5' -59.9 NC_006146.1 + 120008 0.75 0.298531
Target:  5'- aGGCCCAGGCCGcACccGCGGCCaguCCGg -3'
miRNA:   3'- gCCGGGUCUGGUuUGu-CGCUGGg--GGC- -5'
29054 5' -59.9 NC_006146.1 + 139133 0.74 0.326075
Target:  5'- gGGCUgUGGGCCGAACGGgGGCUCCCGu -3'
miRNA:   3'- gCCGG-GUCUGGUUUGUCgCUGGGGGC- -5'
29054 5' -59.9 NC_006146.1 + 67625 0.75 0.312072
Target:  5'- uCGGCCgAGGCCAGuggaaGGCG-CCCCCu -3'
miRNA:   3'- -GCCGGgUCUGGUUug---UCGCuGGGGGc -5'
29054 5' -59.9 NC_006146.1 + 144837 0.76 0.26668
Target:  5'- cCGGCCCacguugcggcGGGCCAAuuGCAGCGGcucuCCCCCu -3'
miRNA:   3'- -GCCGGG----------UCUGGUU--UGUCGCU----GGGGGc -5'
29054 5' -59.9 NC_006146.1 + 3819 0.78 0.196712
Target:  5'- uGGgUCAGGCCAGGCGGgGcACCCCCGc -3'
miRNA:   3'- gCCgGGUCUGGUUUGUCgC-UGGGGGC- -5'
29054 5' -59.9 NC_006146.1 + 109192 0.75 0.314836
Target:  5'- aGGCCCAGACagagggcuggacuGGCGGCGGUCCCCa -3'
miRNA:   3'- gCCGGGUCUGgu-----------UUGUCGCUGGGGGc -5'
29054 5' -59.9 NC_006146.1 + 13864 0.78 0.211286
Target:  5'- gCGGCCCGGugUgc-CAGCGuCCCCCGc -3'
miRNA:   3'- -GCCGGGUCugGuuuGUCGCuGGGGGC- -5'
29054 5' -59.9 NC_006146.1 + 130330 0.76 0.26668
Target:  5'- gGGCCaGGACCucauCAGCGuCCCCCGc -3'
miRNA:   3'- gCCGGgUCUGGuuu-GUCGCuGGGGGC- -5'
29054 5' -59.9 NC_006146.1 + 56315 0.75 0.318316
Target:  5'- uGGCCCAGGCCGuAGCuGCGccgcgagaaggagGCCgCCCGg -3'
miRNA:   3'- gCCGGGUCUGGU-UUGuCGC-------------UGG-GGGC- -5'
29054 5' -59.9 NC_006146.1 + 129055 0.74 0.347943
Target:  5'- gGGCCCAGACgc--CGGCGcagacaGCCCCCGc -3'
miRNA:   3'- gCCGGGUCUGguuuGUCGC------UGGGGGC- -5'
29054 5' -59.9 NC_006146.1 + 20019 0.78 0.211286
Target:  5'- gCGGCCCGGugUgc-CAGCGuCCCCCGc -3'
miRNA:   3'- -GCCGGGUCugGuuuGUCGCuGGGGGC- -5'
29054 5' -59.9 NC_006146.1 + 29253 0.78 0.211286
Target:  5'- gCGGCCCGGugUgc-CAGCGuCCCCCGc -3'
miRNA:   3'- -GCCGGGUCugGuuuGUCGCuGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.