miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29055 3' -58.7 NC_006146.1 + 158126 0.66 0.85712
Target:  5'- uGCAGgGCCGCGUcCA---GGUCCGGc -3'
miRNA:   3'- cUGUCgCGGUGCAuGUgcaCCGGGCC- -5'
29055 3' -58.7 NC_006146.1 + 110849 0.66 0.833849
Target:  5'- aGGCGGCGCCcgaucagagggACGcUGCGucuCG-GGCUCGGg -3'
miRNA:   3'- -CUGUCGCGG-----------UGC-AUGU---GCaCCGGGCC- -5'
29055 3' -58.7 NC_006146.1 + 56751 0.66 0.833849
Target:  5'- -cCAGgGCCAgCaUGCGCcUGGUCCGGa -3'
miRNA:   3'- cuGUCgCGGU-GcAUGUGcACCGGGCC- -5'
29055 3' -58.7 NC_006146.1 + 129538 0.66 0.833849
Target:  5'- aGACAGaGCCACGgcCACcaccgccaGGCCCuGGg -3'
miRNA:   3'- -CUGUCgCGGUGCauGUGca------CCGGG-CC- -5'
29055 3' -58.7 NC_006146.1 + 168466 0.66 0.833045
Target:  5'- uGACGGUGCgcagauccggccuCACGUcCACGgucggggGGCCgGGg -3'
miRNA:   3'- -CUGUCGCG-------------GUGCAuGUGCa------CCGGgCC- -5'
29055 3' -58.7 NC_006146.1 + 71523 0.66 0.82574
Target:  5'- cGACucGCuCCugGgccucaACGCGcGGCCCGGg -3'
miRNA:   3'- -CUGu-CGcGGugCa-----UGUGCaCCGGGCC- -5'
29055 3' -58.7 NC_006146.1 + 42772 0.66 0.82574
Target:  5'- cGACAgGUGCagGCG-GCGCGUGGCCgccuCGGc -3'
miRNA:   3'- -CUGU-CGCGg-UGCaUGUGCACCGG----GCC- -5'
29055 3' -58.7 NC_006146.1 + 14815 0.66 0.82574
Target:  5'- cGGCcGgGCCGgaGgaggGCACGgucucgGGCCCGGg -3'
miRNA:   3'- -CUGuCgCGGUg-Ca---UGUGCa-----CCGGGCC- -5'
29055 3' -58.7 NC_006146.1 + 11328 0.66 0.82574
Target:  5'- aGCAGCuGCaugcacgagaCGCuGUACACG-GGCCUGGc -3'
miRNA:   3'- cUGUCG-CG----------GUG-CAUGUGCaCCGGGCC- -5'
29055 3' -58.7 NC_006146.1 + 60391 0.66 0.841786
Target:  5'- uGCAGCGCCugGagaacaucUGCACccuccuggaccUGGCCgGGg -3'
miRNA:   3'- cUGUCGCGGugC--------AUGUGc----------ACCGGgCC- -5'
29055 3' -58.7 NC_006146.1 + 18368 0.66 0.849545
Target:  5'- uGGCAuGCucacCCugGUcCugGUGGCCgGGg -3'
miRNA:   3'- -CUGU-CGc---GGugCAuGugCACCGGgCC- -5'
29055 3' -58.7 NC_006146.1 + 123568 0.66 0.849545
Target:  5'- aACGGCGCCugGcccgGCugGaGGCCaucauccaGGa -3'
miRNA:   3'- cUGUCGCGGugCa---UGugCaCCGGg-------CC- -5'
29055 3' -58.7 NC_006146.1 + 166821 0.66 0.85712
Target:  5'- cGCGGUGCUGuCG-ACGC--GGCCCGGg -3'
miRNA:   3'- cUGUCGCGGU-GCaUGUGcaCCGGGCC- -5'
29055 3' -58.7 NC_006146.1 + 136572 0.66 0.85712
Target:  5'- cACAGCGCCcccaaaaaGUgaauaaaagaagGCGCGcUGGCCgGGg -3'
miRNA:   3'- cUGUCGCGGug------CA------------UGUGC-ACCGGgCC- -5'
29055 3' -58.7 NC_006146.1 + 51573 0.66 0.85712
Target:  5'- --gGGCGCCGCcgGgAgG-GGCCCGGg -3'
miRNA:   3'- cugUCGCGGUGcaUgUgCaCCGGGCC- -5'
29055 3' -58.7 NC_006146.1 + 32742 0.66 0.85712
Target:  5'- cACAGCGCCcccaaaaaGUgaauaaaagaagGCGCGcUGGCCgGGg -3'
miRNA:   3'- cUGUCGCGGug------CA------------UGUGC-ACCGGgCC- -5'
29055 3' -58.7 NC_006146.1 + 3338 0.66 0.85712
Target:  5'- cACGGCcucuCCGCGggccuccACACGUGGCCUcccaGGa -3'
miRNA:   3'- cUGUCGc---GGUGCa------UGUGCACCGGG----CC- -5'
29055 3' -58.7 NC_006146.1 + 2406 0.66 0.85712
Target:  5'- cACGGCcucuCCGCGggccuccACACGUGGCCUcccaGGa -3'
miRNA:   3'- cUGUCGc---GGUGCa------UGUGCACCGGG----CC- -5'
29055 3' -58.7 NC_006146.1 + 1474 0.66 0.85712
Target:  5'- cACGGCcucuCCGCGggccuccACACGUGGCCUcccaGGa -3'
miRNA:   3'- cUGUCGc---GGUGCa------UGUGCACCGGG----CC- -5'
29055 3' -58.7 NC_006146.1 + 543 0.66 0.85712
Target:  5'- cACGGCcucuCCGCGggccuccACACGUGGCCUcccaGGa -3'
miRNA:   3'- cUGUCGc---GGUGCa------UGUGCACCGGG----CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.