miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29055 3' -58.7 NC_006146.1 + 3722 0.66 0.833849
Target:  5'- aGACAGgGUcuCugGgggcCGCGUGGCCCu- -3'
miRNA:   3'- -CUGUCgCG--GugCau--GUGCACCGGGcc -5'
29055 3' -58.7 NC_006146.1 + 107075 0.66 0.833045
Target:  5'- -cCGGCGCCACG-GCAagaccuggauaguCGUGGCCa-- -3'
miRNA:   3'- cuGUCGCGGUGCaUGU-------------GCACCGGgcc -5'
29055 3' -58.7 NC_006146.1 + 168466 0.66 0.833045
Target:  5'- uGACGGUGCgcagauccggccuCACGUcCACGgucggggGGCCgGGg -3'
miRNA:   3'- -CUGUCGCG-------------GUGCAuGUGCa------CCGGgCC- -5'
29055 3' -58.7 NC_006146.1 + 11328 0.66 0.82574
Target:  5'- aGCAGCuGCaugcacgagaCGCuGUACACG-GGCCUGGc -3'
miRNA:   3'- cUGUCG-CG----------GUG-CAUGUGCaCCGGGCC- -5'
29055 3' -58.7 NC_006146.1 + 28245 0.66 0.82574
Target:  5'- --aGGCGCCugGgcgagGCugGgUGGCUgGGc -3'
miRNA:   3'- cugUCGCGGugCa----UGugC-ACCGGgCC- -5'
29055 3' -58.7 NC_006146.1 + 42772 0.66 0.82574
Target:  5'- cGACAgGUGCagGCG-GCGCGUGGCCgccuCGGc -3'
miRNA:   3'- -CUGU-CGCGg-UGCaUGUGCACCGG----GCC- -5'
29055 3' -58.7 NC_006146.1 + 15934 0.66 0.82574
Target:  5'- --aGGCGCCugGgcgagGCugGgUGGCUgGGc -3'
miRNA:   3'- cugUCGCGGugCa----UGugC-ACCGGgCC- -5'
29055 3' -58.7 NC_006146.1 + 22089 0.66 0.82574
Target:  5'- --aGGCGCCugGgcgagGCugGgUGGCUgGGc -3'
miRNA:   3'- cugUCGCGGugCa----UGugC-ACCGGgCC- -5'
29055 3' -58.7 NC_006146.1 + 19011 0.66 0.82574
Target:  5'- --aGGCGCCugGgcgagGCugGgUGGCUgGGc -3'
miRNA:   3'- cugUCGCGGugCa----UGugC-ACCGGgCC- -5'
29055 3' -58.7 NC_006146.1 + 25167 0.66 0.82574
Target:  5'- --aGGCGCCugGgcgagGCugGgUGGCUgGGc -3'
miRNA:   3'- cugUCGCGGugCa----UGugC-ACCGGgCC- -5'
29055 3' -58.7 NC_006146.1 + 71523 0.66 0.82574
Target:  5'- cGACucGCuCCugGgccucaACGCGcGGCCCGGg -3'
miRNA:   3'- -CUGu-CGcGGugCa-----UGUGCaCCGGGCC- -5'
29055 3' -58.7 NC_006146.1 + 14815 0.66 0.82574
Target:  5'- cGGCcGgGCCGgaGgaggGCACGgucucgGGCCCGGg -3'
miRNA:   3'- -CUGuCgCGGUg-Ca---UGUGCa-----CCGGGCC- -5'
29055 3' -58.7 NC_006146.1 + 115217 0.66 0.823275
Target:  5'- cGGCGGCgGCCGugccCGUGCugGccuucaacgccgccUGGCuCCGGc -3'
miRNA:   3'- -CUGUCG-CGGU----GCAUGugC--------------ACCG-GGCC- -5'
29055 3' -58.7 NC_006146.1 + 105857 0.66 0.817466
Target:  5'- cGCAGUGCCGCuccuCGCaGUGGgCCCuGGg -3'
miRNA:   3'- cUGUCGCGGUGcau-GUG-CACC-GGG-CC- -5'
29055 3' -58.7 NC_006146.1 + 46954 0.66 0.817466
Target:  5'- aGGguGC-CCGCGUAUuuCGccGGCCCGGc -3'
miRNA:   3'- -CUguCGcGGUGCAUGu-GCa-CCGGGCC- -5'
29055 3' -58.7 NC_006146.1 + 146830 0.66 0.817466
Target:  5'- aGGCcGCGCCAgCGUagaGCcCG-GGCCUGGc -3'
miRNA:   3'- -CUGuCGCGGU-GCA---UGuGCaCCGGGCC- -5'
29055 3' -58.7 NC_006146.1 + 51472 0.66 0.817466
Target:  5'- aGCAGCGCU-CGaACugGUGGUgugacagguaCCGGa -3'
miRNA:   3'- cUGUCGCGGuGCaUGugCACCG----------GGCC- -5'
29055 3' -58.7 NC_006146.1 + 8877 0.67 0.809035
Target:  5'- cACAGUGCCACuccAC-CGUGGagCCGGu -3'
miRNA:   3'- cUGUCGCGGUGca-UGuGCACCg-GGCC- -5'
29055 3' -58.7 NC_006146.1 + 159550 0.67 0.809035
Target:  5'- cGCAGCGCC---UGCGCcaGGCCCGu -3'
miRNA:   3'- cUGUCGCGGugcAUGUGcaCCGGGCc -5'
29055 3' -58.7 NC_006146.1 + 397 0.67 0.809035
Target:  5'- cGCc-CGCCGCGcGCugGgGGUCCGGg -3'
miRNA:   3'- cUGucGCGGUGCaUGugCaCCGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.