miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29055 3' -58.7 NC_006146.1 + 397 0.67 0.809035
Target:  5'- cGCc-CGCCGCGcGCugGgGGUCCGGg -3'
miRNA:   3'- cUGucGCGGUGCaUGugCaCCGGGCC- -5'
29055 3' -58.7 NC_006146.1 + 543 0.66 0.85712
Target:  5'- cACGGCcucuCCGCGggccuccACACGUGGCCUcccaGGa -3'
miRNA:   3'- cUGUCGc---GGUGCa------UGUGCACCGGG----CC- -5'
29055 3' -58.7 NC_006146.1 + 1474 0.66 0.85712
Target:  5'- cACGGCcucuCCGCGggccuccACACGUGGCCUcccaGGa -3'
miRNA:   3'- cUGUCGc---GGUGCa------UGUGCACCGGG----CC- -5'
29055 3' -58.7 NC_006146.1 + 2406 0.66 0.85712
Target:  5'- cACGGCcucuCCGCGggccuccACACGUGGCCUcccaGGa -3'
miRNA:   3'- cUGUCGc---GGUGCa------UGUGCACCGGG----CC- -5'
29055 3' -58.7 NC_006146.1 + 3338 0.66 0.85712
Target:  5'- cACGGCcucuCCGCGggccuccACACGUGGCCUcccaGGa -3'
miRNA:   3'- cUGUCGc---GGUGCa------UGUGCACCGGG----CC- -5'
29055 3' -58.7 NC_006146.1 + 3722 0.66 0.833849
Target:  5'- aGACAGgGUcuCugGgggcCGCGUGGCCCu- -3'
miRNA:   3'- -CUGUCgCG--GugCau--GUGCACCGGGcc -5'
29055 3' -58.7 NC_006146.1 + 4119 0.68 0.755571
Target:  5'- uGACGGCgGCCAgCGacuacGCGCGUGaCCUGGg -3'
miRNA:   3'- -CUGUCG-CGGU-GCa----UGUGCACcGGGCC- -5'
29055 3' -58.7 NC_006146.1 + 8877 0.67 0.809035
Target:  5'- cACAGUGCCACuccAC-CGUGGagCCGGu -3'
miRNA:   3'- cUGUCGCGGUGca-UGuGCACCg-GGCC- -5'
29055 3' -58.7 NC_006146.1 + 11328 0.66 0.82574
Target:  5'- aGCAGCuGCaugcacgagaCGCuGUACACG-GGCCUGGc -3'
miRNA:   3'- cUGUCG-CG----------GUG-CAUGUGCaCCGGGCC- -5'
29055 3' -58.7 NC_006146.1 + 13895 0.68 0.740621
Target:  5'- gGACGGCcgagGCCGCGcgugACuuuuuggaaggagugGCGggugGGCCCGGg -3'
miRNA:   3'- -CUGUCG----CGGUGCa---UG---------------UGCa---CCGGGCC- -5'
29055 3' -58.7 NC_006146.1 + 14131 0.7 0.639432
Target:  5'- cGGCGGCcuacaGCCAggUGUACGCGcUGGCCgUGGa -3'
miRNA:   3'- -CUGUCG-----CGGU--GCAUGUGC-ACCGG-GCC- -5'
29055 3' -58.7 NC_006146.1 + 14815 0.66 0.82574
Target:  5'- cGGCcGgGCCGgaGgaggGCACGgucucgGGCCCGGg -3'
miRNA:   3'- -CUGuCgCGGUg-Ca---UGUGCa-----CCGGGCC- -5'
29055 3' -58.7 NC_006146.1 + 15934 0.66 0.82574
Target:  5'- --aGGCGCCugGgcgagGCugGgUGGCUgGGc -3'
miRNA:   3'- cugUCGCGGugCa----UGugC-ACCGGgCC- -5'
29055 3' -58.7 NC_006146.1 + 18368 0.66 0.849545
Target:  5'- uGGCAuGCucacCCugGUcCugGUGGCCgGGg -3'
miRNA:   3'- -CUGU-CGc---GGugCAuGugCACCGGgCC- -5'
29055 3' -58.7 NC_006146.1 + 19011 0.66 0.82574
Target:  5'- --aGGCGCCugGgcgagGCugGgUGGCUgGGc -3'
miRNA:   3'- cugUCGCGGugCa----UGugC-ACCGGgCC- -5'
29055 3' -58.7 NC_006146.1 + 19378 0.69 0.669064
Target:  5'- aACAGCGUgucuCACGUGgcCACGUGGCUgcaGGa -3'
miRNA:   3'- cUGUCGCG----GUGCAU--GUGCACCGGg--CC- -5'
29055 3' -58.7 NC_006146.1 + 22089 0.66 0.82574
Target:  5'- --aGGCGCCugGgcgagGCugGgUGGCUgGGc -3'
miRNA:   3'- cugUCGCGGugCa----UGugC-ACCGGgCC- -5'
29055 3' -58.7 NC_006146.1 + 24508 0.75 0.335434
Target:  5'- gGACAa-GCCAC-UGCACGUaGGCCCGGg -3'
miRNA:   3'- -CUGUcgCGGUGcAUGUGCA-CCGGGCC- -5'
29055 3' -58.7 NC_006146.1 + 25167 0.66 0.82574
Target:  5'- --aGGCGCCugGgcgagGCugGgUGGCUgGGc -3'
miRNA:   3'- cugUCGCGGugCa----UGugC-ACCGGgCC- -5'
29055 3' -58.7 NC_006146.1 + 25853 0.68 0.717782
Target:  5'- -cCAGCGCCAgGgcUGCGCGcucacgcuGCCCGGg -3'
miRNA:   3'- cuGUCGCGGUgC--AUGUGCac------CGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.