Results 1 - 20 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29055 | 3' | -58.7 | NC_006146.1 | + | 93356 | 1.09 | 0.002036 |
Target: 5'- gGACAGCGCCACGUACACGUGGCCCGGu -3' miRNA: 3'- -CUGUCGCGGUGCAUGUGCACCGGGCC- -5' |
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29055 | 3' | -58.7 | NC_006146.1 | + | 150119 | 0.69 | 0.669064 |
Target: 5'- aGACGGCGUugCACGUGCACuugaUGGCCa-- -3' miRNA: 3'- -CUGUCGCG--GUGCAUGUGc---ACCGGgcc -5' |
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29055 | 3' | -58.7 | NC_006146.1 | + | 112177 | 0.69 | 0.698443 |
Target: 5'- --uGGUGgCAUuggugGUGCugGUGGCCUGGg -3' miRNA: 3'- cugUCGCgGUG-----CAUGugCACCGGGCC- -5' |
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29055 | 3' | -58.7 | NC_006146.1 | + | 158126 | 0.66 | 0.85712 |
Target: 5'- uGCAGgGCCGCGUcCA---GGUCCGGc -3' miRNA: 3'- cUGUCgCGGUGCAuGUgcaCCGGGCC- -5' |
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29055 | 3' | -58.7 | NC_006146.1 | + | 167803 | 0.75 | 0.350279 |
Target: 5'- --gGGCGUgGCGggcGCGCGUGGCCCGc -3' miRNA: 3'- cugUCGCGgUGCa--UGUGCACCGGGCc -5' |
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29055 | 3' | -58.7 | NC_006146.1 | + | 168735 | 0.75 | 0.350279 |
Target: 5'- --gGGCGUgGCGggcGCGCGUGGCCCGc -3' miRNA: 3'- cugUCGCGgUGCa--UGUGCACCGGGCc -5' |
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29055 | 3' | -58.7 | NC_006146.1 | + | 167640 | 0.74 | 0.381349 |
Target: 5'- cGCGGgGCCcggcGCGUGC-CGggGGCCCGGg -3' miRNA: 3'- cUGUCgCGG----UGCAUGuGCa-CCGGGCC- -5' |
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29055 | 3' | -58.7 | NC_006146.1 | + | 102863 | 0.74 | 0.397558 |
Target: 5'- gGGCAGcCGCCACcUGguCGUGGCCgGGc -3' miRNA: 3'- -CUGUC-GCGGUGcAUguGCACCGGgCC- -5' |
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29055 | 3' | -58.7 | NC_006146.1 | + | 70209 | 0.71 | 0.570422 |
Target: 5'- cGCAGCGCCGgGUGC-CGagGGCCgCGa -3' miRNA: 3'- cUGUCGCGGUgCAUGuGCa-CCGG-GCc -5' |
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29055 | 3' | -58.7 | NC_006146.1 | + | 67305 | 0.69 | 0.659204 |
Target: 5'- -cCAGCucccggGCCACGUcCGCGcUGaGCCCGGc -3' miRNA: 3'- cuGUCG------CGGUGCAuGUGC-AC-CGGGCC- -5' |
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29055 | 3' | -58.7 | NC_006146.1 | + | 55611 | 0.71 | 0.589045 |
Target: 5'- aGCAGgGCCuCGUACACGUagucguagaagagGGCCCc- -3' miRNA: 3'- cUGUCgCGGuGCAUGUGCA-------------CCGGGcc -5' |
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29055 | 3' | -58.7 | NC_006146.1 | + | 148133 | 0.72 | 0.531741 |
Target: 5'- --gAGUGCCGCaugggcuucGUGCugGUcagGGCCCGGg -3' miRNA: 3'- cugUCGCGGUG---------CAUGugCA---CCGGGCC- -5' |
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29055 | 3' | -58.7 | NC_006146.1 | + | 127157 | 0.77 | 0.280706 |
Target: 5'- gGACGGCGUCAU--GCGCGaccaccUGGCCCGGg -3' miRNA: 3'- -CUGUCGCGGUGcaUGUGC------ACCGGGCC- -5' |
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29055 | 3' | -58.7 | NC_006146.1 | + | 33573 | 0.7 | 0.599878 |
Target: 5'- cGGgGGuCGCCGCGUuCGC-UGGUCCGGu -3' miRNA: 3'- -CUgUC-GCGGUGCAuGUGcACCGGGCC- -5' |
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29055 | 3' | -58.7 | NC_006146.1 | + | 94788 | 0.76 | 0.300357 |
Target: 5'- uGCGG-GCCACGUcCACGUaggccaGGCCCGGg -3' miRNA: 3'- cUGUCgCGGUGCAuGUGCA------CCGGGCC- -5' |
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29055 | 3' | -58.7 | NC_006146.1 | + | 47629 | 0.72 | 0.494048 |
Target: 5'- cGAUAGgGCCACGaGC-CGUcucuggccgcGGCCCGGc -3' miRNA: 3'- -CUGUCgCGGUGCaUGuGCA----------CCGGGCC- -5' |
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29055 | 3' | -58.7 | NC_006146.1 | + | 53353 | 0.7 | 0.60975 |
Target: 5'- gGGCGGCGUgAgGUcUugGcUGGCCCGGc -3' miRNA: 3'- -CUGUCGCGgUgCAuGugC-ACCGGGCC- -5' |
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29055 | 3' | -58.7 | NC_006146.1 | + | 118240 | 0.69 | 0.688691 |
Target: 5'- aGGCGGCuGCgCACGUACugGgGGCCa-- -3' miRNA: 3'- -CUGUCG-CG-GUGCAUGugCaCCGGgcc -5' |
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29055 | 3' | -58.7 | NC_006146.1 | + | 111725 | 0.75 | 0.332521 |
Target: 5'- aGCAGCGCaaccuauccgacgACGUGCugGUGGCCCu- -3' miRNA: 3'- cUGUCGCGg------------UGCAUGugCACCGGGcc -5' |
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29055 | 3' | -58.7 | NC_006146.1 | + | 169667 | 0.75 | 0.350279 |
Target: 5'- --gGGCGUgGCGggcGCGCGUGGCCCGc -3' miRNA: 3'- cugUCGCGgUGCa--UGUGCACCGGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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