miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29056 3' -65 NC_006146.1 + 108552 0.66 0.575623
Target:  5'- cGCGGCgUuggagugGCUGGGCUUggCUGGcGGCgGCg -3'
miRNA:   3'- -CGCUGgG-------CGGCCCGAG--GACC-CCGaCG- -5'
29056 3' -65 NC_006146.1 + 36224 0.66 0.570913
Target:  5'- aGCGcaaGCCgGCCGgggaggaggcagggcGGCUUCUGGaGaGCUGUg -3'
miRNA:   3'- -CGC---UGGgCGGC---------------CCGAGGACC-C-CGACG- -5'
29056 3' -65 NC_006146.1 + 86453 0.66 0.567152
Target:  5'- aGgGGCa-GCUGGGCUUUgagGGGGCaGCc -3'
miRNA:   3'- -CgCUGggCGGCCCGAGGa--CCCCGaCG- -5'
29056 3' -65 NC_006146.1 + 92449 0.66 0.567152
Target:  5'- gGUGGCCCGCCuGGGgUCUgaauugGcGGGUauaugUGCc -3'
miRNA:   3'- -CGCUGGGCGG-CCCgAGGa-----C-CCCG-----ACG- -5'
29056 3' -65 NC_006146.1 + 141516 0.66 0.567152
Target:  5'- gGCGAgUgGaCGGGCcugggaggcuggUUCUGGGGCUGg -3'
miRNA:   3'- -CGCUgGgCgGCCCG------------AGGACCCCGACg -5'
29056 3' -65 NC_006146.1 + 144594 0.66 0.567152
Target:  5'- gGCGAgUgGaCGGGCcugggaggcuggUUCUGGGGCUGg -3'
miRNA:   3'- -CGCUgGgCgGCCCG------------AGGACCCCGACg -5'
29056 3' -65 NC_006146.1 + 150749 0.66 0.567152
Target:  5'- gGCGAgUgGaCGGGCcugggaggcuggUUCUGGGGCUGg -3'
miRNA:   3'- -CGCUgGgCgGCCCG------------AGGACCCCGACg -5'
29056 3' -65 NC_006146.1 + 153827 0.66 0.567152
Target:  5'- gGCGAgUgGaCGGGCcugggaggcuggUUCUGGGGCUGg -3'
miRNA:   3'- -CGCUgGgCgGCCCG------------AGGACCCCGACg -5'
29056 3' -65 NC_006146.1 + 156905 0.66 0.567152
Target:  5'- gGCGAgUgGaCGGGCcugggaggcuggUUCUGGGGCUGg -3'
miRNA:   3'- -CGCUgGgCgGCCCG------------AGGACCCCGACg -5'
29056 3' -65 NC_006146.1 + 24055 0.66 0.567152
Target:  5'- cGCGGCCCcgagccagGcCCGGGCUCuacgCUGGcGCgGCc -3'
miRNA:   3'- -CGCUGGG--------C-GGCCCGAG----GACCcCGaCG- -5'
29056 3' -65 NC_006146.1 + 62363 0.66 0.567152
Target:  5'- aGCcACCCGCUguacgaggacgGGGCcucggCCUGGGGUa-- -3'
miRNA:   3'- -CGcUGGGCGG-----------CCCGa----GGACCCCGacg -5'
29056 3' -65 NC_006146.1 + 63348 0.66 0.557777
Target:  5'- aUGugCCGguaaCUGGGCacagggcccUCCUGGGGCUc- -3'
miRNA:   3'- cGCugGGC----GGCCCG---------AGGACCCCGAcg -5'
29056 3' -65 NC_006146.1 + 137669 0.66 0.557777
Target:  5'- gGCgGACCCGCC-GGCggCCacccGGCUGCc -3'
miRNA:   3'- -CG-CUGGGCGGcCCGa-GGacc-CCGACG- -5'
29056 3' -65 NC_006146.1 + 137792 0.66 0.557777
Target:  5'- gGCGaACCCGCC-GGCggCCacccGGCUGCc -3'
miRNA:   3'- -CGC-UGGGCGGcCCGa-GGacc-CCGACG- -5'
29056 3' -65 NC_006146.1 + 137731 0.66 0.557777
Target:  5'- gGCcuACCCGguuCUGGaGCUCCUGGGGgUccGCu -3'
miRNA:   3'- -CGc-UGGGC---GGCC-CGAGGACCCCgA--CG- -5'
29056 3' -65 NC_006146.1 + 113750 0.66 0.556842
Target:  5'- aGCGGCCCGUCccguccgGGGCUC--GGGGUcggagacuUGUa -3'
miRNA:   3'- -CGCUGGGCGG-------CCCGAGgaCCCCG--------ACG- -5'
29056 3' -65 NC_006146.1 + 89911 0.66 0.548447
Target:  5'- cGUGACaaaaaaCGCCGGaGCUgCguuGGCUGCa -3'
miRNA:   3'- -CGCUGg-----GCGGCC-CGAgGaccCCGACG- -5'
29056 3' -65 NC_006146.1 + 88495 0.66 0.548447
Target:  5'- -gGAgCCaaUGGGg-CCUGGGGCUGUa -3'
miRNA:   3'- cgCUgGGcgGCCCgaGGACCCCGACG- -5'
29056 3' -65 NC_006146.1 + 71481 0.66 0.548447
Target:  5'- -gGGCCUGCCGuuuGGCcgguggugCCUGGGGgagGCg -3'
miRNA:   3'- cgCUGGGCGGC---CCGa-------GGACCCCga-CG- -5'
29056 3' -65 NC_006146.1 + 51819 0.66 0.539166
Target:  5'- gGCGGCCUcCuCGGGaagcgCCggagGuGGGCUGCg -3'
miRNA:   3'- -CGCUGGGcG-GCCCga---GGa---C-CCCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.