miRNA display CGI


Results 1 - 20 of 203 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29056 3' -65 NC_006146.1 + 93600 1.12 0.00036
Target:  5'- cGCGACCCGCCGGGCUCCUGGGGCUGCu -3'
miRNA:   3'- -CGCUGGGCGGCCCGAGGACCCCGACG- -5'
29056 3' -65 NC_006146.1 + 56661 0.79 0.081996
Target:  5'- aGCuGGCCCucccugagguGCCGGGCccCCUGGGGCUGg -3'
miRNA:   3'- -CG-CUGGG----------CGGCCCGa-GGACCCCGACg -5'
29056 3' -65 NC_006146.1 + 71857 0.78 0.09749
Target:  5'- cCGAcaCCCGCCGGGC-CCUGGGGg-GCc -3'
miRNA:   3'- cGCU--GGGCGGCCCGaGGACCCCgaCG- -5'
29056 3' -65 NC_006146.1 + 92089 0.78 0.106761
Target:  5'- gGCGGCCCggccuggggcugcuGCUgggGGGCgggcccggCCUGGGGCUGCu -3'
miRNA:   3'- -CGCUGGG--------------CGG---CCCGa-------GGACCCCGACG- -5'
29056 3' -65 NC_006146.1 + 55259 0.75 0.162043
Target:  5'- gGCGGCCCGggcgaaGcGGCUCgUGGGGCUcGCg -3'
miRNA:   3'- -CGCUGGGCgg----C-CCGAGgACCCCGA-CG- -5'
29056 3' -65 NC_006146.1 + 39669 0.74 0.173529
Target:  5'- uUGGCCuuggaggCGgCGGGCUCCUGGGcCUGCa -3'
miRNA:   3'- cGCUGG-------GCgGCCCGAGGACCCcGACG- -5'
29056 3' -65 NC_006146.1 + 117575 0.74 0.178073
Target:  5'- cGCGG-CCGCCGGGcCUCCUcGGGCUc- -3'
miRNA:   3'- -CGCUgGGCGGCCC-GAGGAcCCCGAcg -5'
29056 3' -65 NC_006146.1 + 7695 0.74 0.182295
Target:  5'- aCGGCCUGCCcGGCUCCUcugaGGGGCa-- -3'
miRNA:   3'- cGCUGGGCGGcCCGAGGA----CCCCGacg -5'
29056 3' -65 NC_006146.1 + 42669 0.74 0.191005
Target:  5'- uGCGGCUCGCCcgcgguGGGCUgCCUGaGGCUGg -3'
miRNA:   3'- -CGCUGGGCGG------CCCGA-GGACcCCGACg -5'
29056 3' -65 NC_006146.1 + 92251 0.74 0.195495
Target:  5'- uGUGGCugCUGCUgggGGGCgggcccggCCUGGGGCUGCu -3'
miRNA:   3'- -CGCUG--GGCGG---CCCGa-------GGACCCCGACG- -5'
29056 3' -65 NC_006146.1 + 44776 0.74 0.200078
Target:  5'- aGgGugCCguGCCGGGCUCaggGGGGCgcaGCg -3'
miRNA:   3'- -CgCugGG--CGGCCCGAGga-CCCCGa--CG- -5'
29056 3' -65 NC_006146.1 + 92155 0.73 0.209043
Target:  5'- cCGGCCUgggGCugcugcuggggggCGGGCccggCCUGGGGCUGCu -3'
miRNA:   3'- cGCUGGG---CG-------------GCCCGa---GGACCCCGACG- -5'
29056 3' -65 NC_006146.1 + 92006 0.73 0.209043
Target:  5'- cCGGCCUgggGCugcugcuggggggCGGGCccggCCUGGGGCUGCu -3'
miRNA:   3'- cGCUGGG---CG-------------GCCCGa---GGACCCCGACG- -5'
29056 3' -65 NC_006146.1 + 85910 0.73 0.219352
Target:  5'- -aGAgCCGCgGGGCUuuacCCUGGGGCcuggauggccUGCg -3'
miRNA:   3'- cgCUgGGCGgCCCGA----GGACCCCG----------ACG- -5'
29056 3' -65 NC_006146.1 + 124738 0.73 0.224412
Target:  5'- cUGGCCCcacCCGaGUUCCUGGGGCUGg -3'
miRNA:   3'- cGCUGGGc--GGCcCGAGGACCCCGACg -5'
29056 3' -65 NC_006146.1 + 157804 0.73 0.229571
Target:  5'- -gGAcCCCGCCuGGCgacCCUGGGGuCUGUc -3'
miRNA:   3'- cgCU-GGGCGGcCCGa--GGACCCC-GACG- -5'
29056 3' -65 NC_006146.1 + 145493 0.73 0.229571
Target:  5'- -gGAcCCCGCCuGGCgacCCUGGGGuCUGUc -3'
miRNA:   3'- cgCU-GGGCGGcCCGa--GGACCCC-GACG- -5'
29056 3' -65 NC_006146.1 + 148571 0.73 0.229571
Target:  5'- -gGAcCCCGCCuGGCgacCCUGGGGuCUGUc -3'
miRNA:   3'- cgCU-GGGCGGcCCGa--GGACCCC-GACG- -5'
29056 3' -65 NC_006146.1 + 142415 0.73 0.229571
Target:  5'- -gGAcCCCGCCuGGCgacCCUGGGGuCUGUc -3'
miRNA:   3'- cgCU-GGGCGGcCCGa--GGACCCC-GACG- -5'
29056 3' -65 NC_006146.1 + 154726 0.73 0.229571
Target:  5'- -gGAcCCCGCCuGGCgacCCUGGGGuCUGUc -3'
miRNA:   3'- cgCU-GGGCGGcCCGa--GGACCCC-GACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.