miRNA display CGI


Results 21 - 40 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29056 3' -65 NC_006146.1 + 88962 0.66 0.537316
Target:  5'- aGUGgaGCCUGCUGGGaauguuguggCUGGGGCUGa -3'
miRNA:   3'- -CGC--UGGGCGGCCCgag-------GACCCCGACg -5'
29056 3' -65 NC_006146.1 + 36987 0.66 0.530859
Target:  5'- uGCGGCCCaCCGGGUUCUaaacagacaucaauGGGCaGCu -3'
miRNA:   3'- -CGCUGGGcGGCCCGAGGac------------CCCGaCG- -5'
29056 3' -65 NC_006146.1 + 17596 0.66 0.529939
Target:  5'- gGCGACCUGgcCCGGGCcuggugCCUGGaGCagaaaagGCa -3'
miRNA:   3'- -CGCUGGGC--GGCCCGa-----GGACCcCGa------CG- -5'
29056 3' -65 NC_006146.1 + 170516 0.66 0.520771
Target:  5'- aGCG-CgCGgCGGGCggggCCUgagGGGGCgcgGCg -3'
miRNA:   3'- -CGCuGgGCgGCCCGa---GGA---CCCCGa--CG- -5'
29056 3' -65 NC_006146.1 + 47014 0.66 0.520771
Target:  5'- aGCGGCCCGgucggacuCgCGGGCgcCCUGGGuGCgagaagggGCc -3'
miRNA:   3'- -CGCUGGGC--------G-GCCCGa-GGACCC-CGa-------CG- -5'
29056 3' -65 NC_006146.1 + 105189 0.66 0.520771
Target:  5'- aGUGACCgggGCCGGGgagCC-GGGGgUGCc -3'
miRNA:   3'- -CGCUGGg--CGGCCCga-GGaCCCCgACG- -5'
29056 3' -65 NC_006146.1 + 117224 0.66 0.520771
Target:  5'- uGCuGCCC-CCGGGCuUCCUGGaaaGCgGCc -3'
miRNA:   3'- -CGcUGGGcGGCCCG-AGGACCc--CGaCG- -5'
29056 3' -65 NC_006146.1 + 53028 0.67 0.5153
Target:  5'- cGCGGCUgGCCGcGGCcgCCgccgagagguaaggGGGGCggGUg -3'
miRNA:   3'- -CGCUGGgCGGC-CCGa-GGa-------------CCCCGa-CG- -5'
29056 3' -65 NC_006146.1 + 41586 0.67 0.511665
Target:  5'- cUGGCUgGCCGaGGCggagaggCCcggGGGGCUGg -3'
miRNA:   3'- cGCUGGgCGGC-CCGa------GGa--CCCCGACg -5'
29056 3' -65 NC_006146.1 + 77470 0.67 0.511665
Target:  5'- aUGACCauaGCCaaGGC-CCaGGGGCUGUc -3'
miRNA:   3'- cGCUGGg--CGGc-CCGaGGaCCCCGACG- -5'
29056 3' -65 NC_006146.1 + 45125 0.67 0.502626
Target:  5'- gGUGA-CCGCCGGGagCCUuGGGCUuuGCg -3'
miRNA:   3'- -CGCUgGGCGGCCCgaGGAcCCCGA--CG- -5'
29056 3' -65 NC_006146.1 + 28226 0.67 0.502626
Target:  5'- cCGACCCaGCCGGaGggCa-GGuGGCUGCg -3'
miRNA:   3'- cGCUGGG-CGGCC-CgaGgaCC-CCGACG- -5'
29056 3' -65 NC_006146.1 + 28034 0.67 0.502626
Target:  5'- cCGACCCaGCCGGaGggCa-GGuGGCUGCa -3'
miRNA:   3'- cGCUGGG-CGGCC-CgaGgaCC-CCGACG- -5'
29056 3' -65 NC_006146.1 + 44502 0.67 0.502626
Target:  5'- cGCGACCC--CGGGCgUCC-GGGGUuucagGCu -3'
miRNA:   3'- -CGCUGGGcgGCCCG-AGGaCCCCGa----CG- -5'
29056 3' -65 NC_006146.1 + 137744 0.67 0.502626
Target:  5'- gGCGguGCCCaGCCGGGCcaccccccacCCggagcGGGGCaGCg -3'
miRNA:   3'- -CGC--UGGG-CGGCCCGa---------GGa----CCCCGaCG- -5'
29056 3' -65 NC_006146.1 + 118008 0.67 0.502626
Target:  5'- cGCaGACCaUGCgGGGCUC--GGGGC-GCg -3'
miRNA:   3'- -CG-CUGG-GCGgCCCGAGgaCCCCGaCG- -5'
29056 3' -65 NC_006146.1 + 12770 0.67 0.502626
Target:  5'- uGUGACCUGCCGGa--CCUGGacgcGGCccUGCa -3'
miRNA:   3'- -CGCUGGGCGGCCcgaGGACC----CCG--ACG- -5'
29056 3' -65 NC_006146.1 + 101056 0.67 0.501726
Target:  5'- cCGACCUcccgaggGCCacGGGCUCaugcugUGGGGCaGCa -3'
miRNA:   3'- cGCUGGG-------CGG--CCCGAGg-----ACCCCGaCG- -5'
29056 3' -65 NC_006146.1 + 149112 0.67 0.493657
Target:  5'- cGCGcccggcauCCCGCUGGGCUUagaaugGuGGGCggGCg -3'
miRNA:   3'- -CGCu-------GGGCGGCCCGAGga----C-CCCGa-CG- -5'
29056 3' -65 NC_006146.1 + 110021 0.67 0.493657
Target:  5'- -gGGCCCcagGCCGGuCUgCaGGGGCUGUc -3'
miRNA:   3'- cgCUGGG---CGGCCcGAgGaCCCCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.