miRNA display CGI


Results 1 - 20 of 203 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29056 3' -65 NC_006146.1 + 7695 0.74 0.182295
Target:  5'- aCGGCCUGCCcGGCUCCUcugaGGGGCa-- -3'
miRNA:   3'- cGCUGGGCGGcCCGAGGA----CCCCGacg -5'
29056 3' -65 NC_006146.1 + 8044 0.69 0.384828
Target:  5'- gGC-ACCCGCUGgacccGGC-CCUGGGGgUGUc -3'
miRNA:   3'- -CGcUGGGCGGC-----CCGaGGACCCCgACG- -5'
29056 3' -65 NC_006146.1 + 8331 0.67 0.467208
Target:  5'- cCGACCCuCCGuGGCgcaaguacucCCUGGGG-UGCu -3'
miRNA:   3'- cGCUGGGcGGC-CCGa---------GGACCCCgACG- -5'
29056 3' -65 NC_006146.1 + 8509 0.69 0.384828
Target:  5'- cUGGCCCaCCGGGgUCCcGGGcGCggGCg -3'
miRNA:   3'- cGCUGGGcGGCCCgAGGaCCC-CGa-CG- -5'
29056 3' -65 NC_006146.1 + 11833 0.7 0.351752
Target:  5'- uGgGACCCcuugcGCCGGGCccugcuucucgggCUUGGGGCggGCc -3'
miRNA:   3'- -CgCUGGG-----CGGCCCGa------------GGACCCCGa-CG- -5'
29056 3' -65 NC_006146.1 + 12770 0.67 0.502626
Target:  5'- uGUGACCUGCCGGa--CCUGGacgcGGCccUGCa -3'
miRNA:   3'- -CGCUGGGCGGCCcgaGGACC----CCG--ACG- -5'
29056 3' -65 NC_006146.1 + 12845 0.71 0.280599
Target:  5'- -gGACCCGagGaGGCgCCUGGGGCgagGCu -3'
miRNA:   3'- cgCUGGGCggC-CCGaGGACCCCGa--CG- -5'
29056 3' -65 NC_006146.1 + 13096 0.69 0.362054
Target:  5'- -aGACCCcagggucgccagGCgGGGUccggccucUCCUGGGGCaGCa -3'
miRNA:   3'- cgCUGGG------------CGgCCCG--------AGGACCCCGaCG- -5'
29056 3' -65 NC_006146.1 + 13550 0.68 0.433122
Target:  5'- uGCuGCaggCGCCGGGCgCC--GGGCUGCg -3'
miRNA:   3'- -CGcUGg--GCGGCCCGaGGacCCCGACG- -5'
29056 3' -65 NC_006146.1 + 14538 0.68 0.41663
Target:  5'- --aGCCUGgaCCGGGC-CCUGGaGCUGCu -3'
miRNA:   3'- cgcUGGGC--GGCCCGaGGACCcCGACG- -5'
29056 3' -65 NC_006146.1 + 14618 0.68 0.41663
Target:  5'- uGUGcCCUGCUGGcGCUgCgUGGGGgaGCu -3'
miRNA:   3'- -CGCuGGGCGGCC-CGA-GgACCCCgaCG- -5'
29056 3' -65 NC_006146.1 + 15048 0.72 0.240189
Target:  5'- -gGGCCCGCCGGGCcugCgaGGaGGCacugGCg -3'
miRNA:   3'- cgCUGGGCGGCCCGa--GgaCC-CCGa---CG- -5'
29056 3' -65 NC_006146.1 + 16174 0.69 0.362054
Target:  5'- -aGACCCcagggucgccagGCgGGGUccggccucUCCUGGGGCaGCa -3'
miRNA:   3'- cgCUGGG------------CGgCCCG--------AGGACCCCGaCG- -5'
29056 3' -65 NC_006146.1 + 17596 0.66 0.529939
Target:  5'- gGCGACCUGgcCCGGGCcuggugCCUGGaGCagaaaagGCa -3'
miRNA:   3'- -CGCUGGGC--GGCCCGa-----GGACCcCGa------CG- -5'
29056 3' -65 NC_006146.1 + 17699 0.68 0.408529
Target:  5'- gGCGGCCCGUgGcGGCcaagcgCCUGGGGg--- -3'
miRNA:   3'- -CGCUGGGCGgC-CCGa-----GGACCCCgacg -5'
29056 3' -65 NC_006146.1 + 19252 0.69 0.362054
Target:  5'- -aGACCCcagggucgccagGCgGGGUccggccucUCCUGGGGCaGCa -3'
miRNA:   3'- cgCUGGG------------CGgCCCG--------AGGACCCCGaCG- -5'
29056 3' -65 NC_006146.1 + 22330 0.69 0.362054
Target:  5'- -aGACCCcagggucgccagGCgGGGUccggccucUCCUGGGGCaGCa -3'
miRNA:   3'- cgCUGGG------------CGgCCCG--------AGGACCCCGaCG- -5'
29056 3' -65 NC_006146.1 + 22609 0.69 0.362054
Target:  5'- cGCGcuCCUGCUGGaGCUCCuguucUGGGuGCUGg -3'
miRNA:   3'- -CGCu-GGGCGGCC-CGAGG-----ACCC-CGACg -5'
29056 3' -65 NC_006146.1 + 24055 0.66 0.567152
Target:  5'- cGCGGCCCcgagccagGcCCGGGCUCuacgCUGGcGCgGCc -3'
miRNA:   3'- -CGCUGGG--------C-GGCCCGAG----GACCcCGaCG- -5'
29056 3' -65 NC_006146.1 + 25408 0.69 0.362054
Target:  5'- -aGACCCcagggucgccagGCgGGGUccggccucUCCUGGGGCaGCa -3'
miRNA:   3'- cgCUGGG------------CGgCCCG--------AGGACCCCGaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.