miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29056 3' -65 NC_006146.1 + 93600 1.12 0.00036
Target:  5'- cGCGACCCGCCGGGCUCCUGGGGCUGCu -3'
miRNA:   3'- -CGCUGGGCGGCCCGAGGACCCCGACG- -5'
29056 3' -65 NC_006146.1 + 135926 0.7 0.319383
Target:  5'- cGgGGCCggggGCCGGGUgccCCUGGGuccGCUGCc -3'
miRNA:   3'- -CgCUGGg---CGGCCCGa--GGACCC---CGACG- -5'
29056 3' -65 NC_006146.1 + 136112 0.7 0.319383
Target:  5'- cGgGGCCggggGCCGGGUgccCCUGGGuccGCUGCc -3'
miRNA:   3'- -CgCUGGg---CGGCCCGa--GGACCC---CGACG- -5'
29056 3' -65 NC_006146.1 + 137731 0.66 0.557777
Target:  5'- gGCcuACCCGguuCUGGaGCUCCUGGGGgUccGCu -3'
miRNA:   3'- -CGc-UGGGC---GGCC-CGAGGACCCCgA--CG- -5'
29056 3' -65 NC_006146.1 + 155578 0.72 0.262652
Target:  5'- gGCG-CCCGCCagGGGCacaCC-GGGGCUGg -3'
miRNA:   3'- -CGCuGGGCGG--CCCGa--GGaCCCCGACg -5'
29056 3' -65 NC_006146.1 + 12845 0.71 0.280599
Target:  5'- -gGACCCGagGaGGCgCCUGGGGCgagGCu -3'
miRNA:   3'- cgCUGGGCggC-CCGaGGACCCCGa--CG- -5'
29056 3' -65 NC_006146.1 + 49526 0.71 0.293096
Target:  5'- gGUGAUCCGg-GGGCUCCUcugGGGGCggagGCc -3'
miRNA:   3'- -CGCUGGGCggCCCGAGGA---CCCCGa---CG- -5'
29056 3' -65 NC_006146.1 + 153498 0.71 0.306024
Target:  5'- aUGGCCgcUGCCGuGCUUCUGGaGGCUGUg -3'
miRNA:   3'- cGCUGG--GCGGCcCGAGGACC-CCGACG- -5'
29056 3' -65 NC_006146.1 + 135369 0.7 0.319383
Target:  5'- cGgGGCCggggGCCGGGUgccCCUGGGuccGCUGCc -3'
miRNA:   3'- -CgCUGGg---CGGCCCGa--GGACCC---CGACG- -5'
29056 3' -65 NC_006146.1 + 135833 0.7 0.319383
Target:  5'- cGgGGCCggggGCCGGGUgccCCUGGGuccGCUGCc -3'
miRNA:   3'- -CgCUGGg---CGGCCCGa--GGACCC---CGACG- -5'
29056 3' -65 NC_006146.1 + 135555 0.7 0.319383
Target:  5'- cGgGGCCggggGCCGGGUgccCCUGGGuccGCUGCc -3'
miRNA:   3'- -CgCUGGg---CGGCCCGa--GGACCC---CGACG- -5'
29056 3' -65 NC_006146.1 + 135276 0.7 0.319383
Target:  5'- cGgGGCCggggGCCGGGUgccCCUGGGuccGCUGCc -3'
miRNA:   3'- -CgCUGGg---CGGCCCGa--GGACCC---CGACG- -5'
29056 3' -65 NC_006146.1 + 55259 0.75 0.162043
Target:  5'- gGCGGCCCGggcgaaGcGGCUCgUGGGGCUcGCg -3'
miRNA:   3'- -CGCUGGGCgg----C-CCGAGgACCCCGA-CG- -5'
29056 3' -65 NC_006146.1 + 135648 0.7 0.319383
Target:  5'- cGgGGCCggggGCCGGGUgccCCUGGGuccGCUGCc -3'
miRNA:   3'- -CgCUGGg---CGGCCCGa--GGACCC---CGACG- -5'
29056 3' -65 NC_006146.1 + 42669 0.74 0.191005
Target:  5'- uGCGGCUCGCCcgcgguGGGCUgCCUGaGGCUGg -3'
miRNA:   3'- -CGCUGGGCGG------CCCGA-GGACcCCGACg -5'
29056 3' -65 NC_006146.1 + 135183 0.7 0.319383
Target:  5'- cGgGGCCggggGCCGGGUgccCCUGGGuccGCUGCc -3'
miRNA:   3'- -CgCUGGg---CGGCCCGa--GGACCC---CGACG- -5'
29056 3' -65 NC_006146.1 + 135740 0.7 0.319383
Target:  5'- cGgGGCCggggGCCGGGUgccCCUGGGuccGCUGCc -3'
miRNA:   3'- -CgCUGGg---CGGCCCGa--GGACCC---CGACG- -5'
29056 3' -65 NC_006146.1 + 136019 0.7 0.319383
Target:  5'- cGgGGCCggggGCCGGGUgccCCUGGGuccGCUGCc -3'
miRNA:   3'- -CgCUGGg---CGGCCCGa--GGACCC---CGACG- -5'
29056 3' -65 NC_006146.1 + 85910 0.73 0.219352
Target:  5'- -aGAgCCGCgGGGCUuuacCCUGGGGCcuggauggccUGCg -3'
miRNA:   3'- cgCUgGGCGgCCCGA----GGACCCCG----------ACG- -5'
29056 3' -65 NC_006146.1 + 33407 0.71 0.289302
Target:  5'- gGUGGCCCGCCuGGGCaccgcUgcgccgccgcucgguCCUGGGGCUccggguGCa -3'
miRNA:   3'- -CGCUGGGCGG-CCCG-----A---------------GGACCCCGA------CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.