miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29056 5' -54.2 NC_006146.1 + 21121 0.66 0.975379
Target:  5'- cCUGGAGGCCGA-GAAGACc------- -3'
miRNA:   3'- -GGCCUCCGGCUuCUUCUGcaacucca -5'
29056 5' -54.2 NC_006146.1 + 45307 0.66 0.975379
Target:  5'- gUGGAaaGCCGGAGAacagcuccuGGACGUUGcGGGg -3'
miRNA:   3'- gGCCUc-CGGCUUCU---------UCUGCAAC-UCCa -5'
29056 5' -54.2 NC_006146.1 + 68310 0.66 0.975379
Target:  5'- gCGGAagcccuccucgGGCCGcGAGAGGAUGgcgucGAGGa -3'
miRNA:   3'- gGCCU-----------CCGGC-UUCUUCUGCaa---CUCCa -5'
29056 5' -54.2 NC_006146.1 + 90201 0.66 0.975379
Target:  5'- -aGGGGGCagagGggGAAGAgGagGAGGc -3'
miRNA:   3'- ggCCUCCGg---CuuCUUCUgCaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 5891 0.66 0.975379
Target:  5'- aCGGAGGCaau-GGAGACG--GAGGc -3'
miRNA:   3'- gGCCUCCGgcuuCUUCUGCaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 44772 0.66 0.974614
Target:  5'- cCCGGcgggcggggaacccAGGCCGggGAucuGGAUGguguguuucUGAGGc -3'
miRNA:   3'- -GGCC--------------UCCGGCuuCU---UCUGCa--------ACUCCa -5'
29056 5' -54.2 NC_006146.1 + 100005 0.66 0.972762
Target:  5'- aUCGGgagcGGGCaCGucGGGAGGCGgcGGGGUc -3'
miRNA:   3'- -GGCC----UCCG-GCu-UCUUCUGCaaCUCCA- -5'
29056 5' -54.2 NC_006146.1 + 123584 0.66 0.972762
Target:  5'- gCUGGAGGCCaucauccAGGAGGCccggGAGGa -3'
miRNA:   3'- -GGCCUCCGGcu-----UCUUCUGcaa-CUCCa -5'
29056 5' -54.2 NC_006146.1 + 116363 0.66 0.972762
Target:  5'- -aGGAGGCgagaggggcaaCGAAGAAGAagaGgagGAGGg -3'
miRNA:   3'- ggCCUCCG-----------GCUUCUUCUg--Caa-CUCCa -5'
29056 5' -54.2 NC_006146.1 + 57011 0.66 0.972762
Target:  5'- -gGGccauGGCCGAGGAGGAgGUgGcGGUg -3'
miRNA:   3'- ggCCu---CCGGCUUCUUCUgCAaCuCCA- -5'
29056 5' -54.2 NC_006146.1 + 122193 0.66 0.972215
Target:  5'- gCgGGAGGCCaGAGAgcGGACGgagcggcgggcGAGGg -3'
miRNA:   3'- -GgCCUCCGGcUUCU--UCUGCaa---------CUCCa -5'
29056 5' -54.2 NC_006146.1 + 6070 0.66 0.969949
Target:  5'- aCGGAGGacagggagaUGggGGAGAUGgagacgGAGGa -3'
miRNA:   3'- gGCCUCCg--------GCuuCUUCUGCaa----CUCCa -5'
29056 5' -54.2 NC_006146.1 + 12985 0.66 0.969949
Target:  5'- gUCGGccuAGGCCcGGGGAGugGagGGGGa -3'
miRNA:   3'- -GGCC---UCCGGcUUCUUCugCaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 167272 0.66 0.969949
Target:  5'- cCCGG-GGCCGcgcguGggGAUGgccggcggGAGGg -3'
miRNA:   3'- -GGCCuCCGGCuu---CuuCUGCaa------CUCCa -5'
29056 5' -54.2 NC_006146.1 + 169136 0.66 0.969949
Target:  5'- cCCGG-GGCCGcgcguGggGAUGgccggcggGAGGg -3'
miRNA:   3'- -GGCCuCCGGCuu---CuuCUGCaa------CUCCa -5'
29056 5' -54.2 NC_006146.1 + 22219 0.66 0.969949
Target:  5'- gUCGGccuAGGCCcGGGGAGugGagGGGGa -3'
miRNA:   3'- -GGCC---UCCGGcUUCUUCugCaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 25297 0.66 0.969949
Target:  5'- gUCGGccuAGGCCcGGGGAGugGagGGGGa -3'
miRNA:   3'- -GGCC---UCCGGcUUCUUCugCaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 16063 0.66 0.969949
Target:  5'- gUCGGccuAGGCCcGGGGAGugGagGGGGa -3'
miRNA:   3'- -GGCC---UCCGGcUUCUUCugCaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 170068 0.66 0.969949
Target:  5'- cCCGG-GGCCGcgcguGggGAUGgccggcggGAGGg -3'
miRNA:   3'- -GGCCuCCGGCuu---CuuCUGCaa------CUCCa -5'
29056 5' -54.2 NC_006146.1 + 72168 0.66 0.969949
Target:  5'- -aGGAGGCCGAGaugcgggucgacGAGGACGcgGcGGc -3'
miRNA:   3'- ggCCUCCGGCUU------------CUUCUGCaaCuCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.