miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29056 5' -54.2 NC_006146.1 + 21121 0.66 0.975379
Target:  5'- cCUGGAGGCCGA-GAAGACc------- -3'
miRNA:   3'- -GGCCUCCGGCUuCUUCUGcaacucca -5'
29056 5' -54.2 NC_006146.1 + 113727 0.66 0.963713
Target:  5'- aCCaGGGGGCCcacugggguGAGGAAGGCGUggaagcgGcGGUc -3'
miRNA:   3'- -GG-CCUCCGG---------CUUCUUCUGCAa------CuCCA- -5'
29056 5' -54.2 NC_006146.1 + 107088 0.66 0.960278
Target:  5'- aUGaAGGCCGggGGAGugGgUG-GGUc -3'
miRNA:   3'- gGCcUCCGGCuuCUUCugCaACuCCA- -5'
29056 5' -54.2 NC_006146.1 + 123143 0.66 0.960278
Target:  5'- cCUGGAGGCCGuacucgccAGGGCGcgcGAGGa -3'
miRNA:   3'- -GGCCUCCGGCuuc-----UUCUGCaa-CUCCa -5'
29056 5' -54.2 NC_006146.1 + 100289 0.66 0.960278
Target:  5'- gCGGAGGCaGcAGAGGcCGUgGAGGc -3'
miRNA:   3'- gGCCUCCGgCuUCUUCuGCAaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 40306 0.66 0.960278
Target:  5'- gCCGGgcaggccaaaguAGGCCGGAGGAGGguagcCGUgGuGGUa -3'
miRNA:   3'- -GGCC------------UCCGGCUUCUUCU-----GCAaCuCCA- -5'
29056 5' -54.2 NC_006146.1 + 56733 0.66 0.966935
Target:  5'- -aGGGGGCCGAAuucgcgcGGGACGUccGGGGc -3'
miRNA:   3'- ggCCUCCGGCUUc------UUCUGCAa-CUCCa -5'
29056 5' -54.2 NC_006146.1 + 4688 0.66 0.966935
Target:  5'- gCGGGGGCaGAuc-AGAUGuUUGAGGUg -3'
miRNA:   3'- gGCCUCCGgCUucuUCUGC-AACUCCA- -5'
29056 5' -54.2 NC_006146.1 + 51580 0.66 0.966935
Target:  5'- gCGGcgcGGCCGAagGGggGAC--UGAGGc -3'
miRNA:   3'- gGCCu--CCGGCU--UCuuCUGcaACUCCa -5'
29056 5' -54.2 NC_006146.1 + 116332 0.66 0.966935
Target:  5'- -aGGAGGagGggGAAGGCGgcGaAGGg -3'
miRNA:   3'- ggCCUCCggCuuCUUCUGCaaC-UCCa -5'
29056 5' -54.2 NC_006146.1 + 125708 0.66 0.966935
Target:  5'- -gGGAGaCgGAGGAAGAUGagGAGGg -3'
miRNA:   3'- ggCCUCcGgCUUCUUCUGCaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 72168 0.66 0.969949
Target:  5'- -aGGAGGCCGAGaugcgggucgacGAGGACGcgGcGGc -3'
miRNA:   3'- ggCCUCCGGCUU------------CUUCUGCaaCuCCa -5'
29056 5' -54.2 NC_006146.1 + 5891 0.66 0.975379
Target:  5'- aCGGAGGCaau-GGAGACG--GAGGc -3'
miRNA:   3'- gGCCUCCGgcuuCUUCUGCaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 123584 0.66 0.972762
Target:  5'- gCUGGAGGCCaucauccAGGAGGCccggGAGGa -3'
miRNA:   3'- -GGCCUCCGGcu-----UCUUCUGcaa-CUCCa -5'
29056 5' -54.2 NC_006146.1 + 116363 0.66 0.972762
Target:  5'- -aGGAGGCgagaggggcaaCGAAGAAGAagaGgagGAGGg -3'
miRNA:   3'- ggCCUCCG-----------GCUUCUUCUg--Caa-CUCCa -5'
29056 5' -54.2 NC_006146.1 + 100005 0.66 0.972762
Target:  5'- aUCGGgagcGGGCaCGucGGGAGGCGgcGGGGUc -3'
miRNA:   3'- -GGCC----UCCG-GCu-UCUUCUGCaaCUCCA- -5'
29056 5' -54.2 NC_006146.1 + 57011 0.66 0.972762
Target:  5'- -gGGccauGGCCGAGGAGGAgGUgGcGGUg -3'
miRNA:   3'- ggCCu---CCGGCUUCUUCUgCAaCuCCA- -5'
29056 5' -54.2 NC_006146.1 + 122193 0.66 0.972215
Target:  5'- gCgGGAGGCCaGAGAgcGGACGgagcggcgggcGAGGg -3'
miRNA:   3'- -GgCCUCCGGcUUCU--UCUGCaa---------CUCCa -5'
29056 5' -54.2 NC_006146.1 + 122515 0.66 0.969949
Target:  5'- aUGGAGGCCGcGGAgcccgGGugGUUcgcggaacucGAGGc -3'
miRNA:   3'- gGCCUCCGGCuUCU-----UCugCAA----------CUCCa -5'
29056 5' -54.2 NC_006146.1 + 6070 0.66 0.969949
Target:  5'- aCGGAGGacagggagaUGggGGAGAUGgagacgGAGGa -3'
miRNA:   3'- gGCCUCCg--------GCuuCUUCUGCaa----CUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.