miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29056 5' -54.2 NC_006146.1 + 93634 1.1 0.004714
Target:  5'- cCCGGAGGCCGAAGAAGACGUUGAGGUg -3'
miRNA:   3'- -GGCCUCCGGCUUCUUCUGCAACUCCA- -5'
29056 5' -54.2 NC_006146.1 + 144800 0.82 0.284019
Target:  5'- -gGGGGGCCGggGAgggAGGCGggGAGGa -3'
miRNA:   3'- ggCCUCCGGCuuCU---UCUGCaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 147878 0.82 0.284019
Target:  5'- -gGGGGGCCGggGAgggAGGCGggGAGGa -3'
miRNA:   3'- ggCCUCCGGCuuCU---UCUGCaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 141722 0.82 0.284019
Target:  5'- -gGGGGGCCGggGAgggAGGCGggGAGGa -3'
miRNA:   3'- ggCCUCCGGCuuCU---UCUGCaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 150956 0.82 0.284019
Target:  5'- -gGGGGGCCGggGAgggAGGCGggGAGGa -3'
miRNA:   3'- ggCCUCCGGCuuCU---UCUGCaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 154034 0.82 0.284019
Target:  5'- -gGGGGGCCGggGAgggAGGCGggGAGGa -3'
miRNA:   3'- ggCCUCCGGCuuCU---UCUGCaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 157112 0.82 0.284019
Target:  5'- -gGGGGGCCGggGAgggAGGCGggGAGGa -3'
miRNA:   3'- ggCCUCCGGCuuCU---UCUGCaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 71390 0.78 0.458754
Target:  5'- gCUGGuGGCCGAGGgcGACGUUGcauuuugggcAGGUa -3'
miRNA:   3'- -GGCCuCCGGCUUCuuCUGCAAC----------UCCA- -5'
29056 5' -54.2 NC_006146.1 + 105843 0.75 0.583975
Target:  5'- uCCGGAGGCgcugccaagagcuCGAGGAAGcCGggGAGGc -3'
miRNA:   3'- -GGCCUCCG-------------GCUUCUUCuGCaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 44674 0.75 0.615382
Target:  5'- cCCGGcagugacuccGGGCCcggaGAGGAGGACGaUGAGGg -3'
miRNA:   3'- -GGCC----------UCCGG----CUUCUUCUGCaACUCCa -5'
29056 5' -54.2 NC_006146.1 + 73407 0.74 0.62555
Target:  5'- gCGGAGGUCGc---GGAUGUUGAGGUc -3'
miRNA:   3'- gGCCUCCGGCuucuUCUGCAACUCCA- -5'
29056 5' -54.2 NC_006146.1 + 140091 0.74 0.656051
Target:  5'- -aGGGGGUgGAAGAGGGgGUggcgGAGGUg -3'
miRNA:   3'- ggCCUCCGgCUUCUUCUgCAa---CUCCA- -5'
29056 5' -54.2 NC_006146.1 + 144893 0.74 0.666191
Target:  5'- cCCGaGAGGCCGAaagcggggggGGggGAC--UGGGGUg -3'
miRNA:   3'- -GGC-CUCCGGCU----------UCuuCUGcaACUCCA- -5'
29056 5' -54.2 NC_006146.1 + 157205 0.74 0.666191
Target:  5'- cCCGaGAGGCCGAaagcggggggGGggGAC--UGGGGUg -3'
miRNA:   3'- -GGC-CUCCGGCU----------UCuuCUGcaACUCCA- -5'
29056 5' -54.2 NC_006146.1 + 141815 0.74 0.666191
Target:  5'- cCCGaGAGGCCGAaagcggggggGGggGAC--UGGGGUg -3'
miRNA:   3'- -GGC-CUCCGGCU----------UCuuCUGcaACUCCA- -5'
29056 5' -54.2 NC_006146.1 + 147971 0.74 0.666191
Target:  5'- cCCGaGAGGCCGAaagcggggggGGggGAC--UGGGGUg -3'
miRNA:   3'- -GGC-CUCCGGCU----------UCuuCUGcaACUCCA- -5'
29056 5' -54.2 NC_006146.1 + 151049 0.74 0.666191
Target:  5'- cCCGaGAGGCCGAaagcggggggGGggGAC--UGGGGUg -3'
miRNA:   3'- -GGC-CUCCGGCU----------UCuuCUGcaACUCCA- -5'
29056 5' -54.2 NC_006146.1 + 154127 0.74 0.666191
Target:  5'- cCCGaGAGGCCGAaagcggggggGGggGAC--UGGGGUg -3'
miRNA:   3'- -GGC-CUCCGGCU----------UCuuCUGcaACUCCA- -5'
29056 5' -54.2 NC_006146.1 + 53340 0.73 0.676303
Target:  5'- cCCGGcGGCCGcGGGgcGGCG-UGAGGUc -3'
miRNA:   3'- -GGCCuCCGGC-UUCuuCUGCaACUCCA- -5'
29056 5' -54.2 NC_006146.1 + 33210 0.73 0.68638
Target:  5'- -gGGAGGCCGGAGggGGagcCGggaUGGGGc -3'
miRNA:   3'- ggCCUCCGGCUUCuuCU---GCa--ACUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.