miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29056 5' -54.2 NC_006146.1 + 19 0.72 0.735922
Target:  5'- -gGGGGGuuGAGGGgccgggauGGAUGUUGGGGg -3'
miRNA:   3'- ggCCUCCggCUUCU--------UCUGCAACUCCa -5'
29056 5' -54.2 NC_006146.1 + 4688 0.66 0.966935
Target:  5'- gCGGGGGCaGAuc-AGAUGuUUGAGGUg -3'
miRNA:   3'- gGCCUCCGgCUucuUCUGC-AACUCCA- -5'
29056 5' -54.2 NC_006146.1 + 5795 0.71 0.783236
Target:  5'- aUGGAGGCaauGAAGGAGACG--GAGGc -3'
miRNA:   3'- gGCCUCCGg--CUUCUUCUGCaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 5891 0.66 0.975379
Target:  5'- aCGGAGGCaau-GGAGACG--GAGGc -3'
miRNA:   3'- gGCCUCCGgcuuCUUCUGCaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 5921 0.69 0.874129
Target:  5'- aCGGAGGCaau-GGAGACGgaggcaaUGAGGg -3'
miRNA:   3'- gGCCUCCGgcuuCUUCUGCa------ACUCCa -5'
29056 5' -54.2 NC_006146.1 + 6070 0.66 0.969949
Target:  5'- aCGGAGGacagggagaUGggGGAGAUGgagacgGAGGa -3'
miRNA:   3'- gGCCUCCg--------GCuuCUUCUGCaa----CUCCa -5'
29056 5' -54.2 NC_006146.1 + 6109 0.69 0.874129
Target:  5'- aUGGAGGCaaCGguGGAGGCGgUGGGGa -3'
miRNA:   3'- gGCCUCCG--GCuuCUUCUGCaACUCCa -5'
29056 5' -54.2 NC_006146.1 + 7913 0.69 0.888122
Target:  5'- -aGGAGGCCGAGGA-GAag--GGGGa -3'
miRNA:   3'- ggCCUCCGGCUUCUuCUgcaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 12835 0.72 0.745599
Target:  5'- uCCGGcGGCCGGacccgAGGAGGCGccUGGGGc -3'
miRNA:   3'- -GGCCuCCGGCU-----UCUUCUGCa-ACUCCa -5'
29056 5' -54.2 NC_006146.1 + 12985 0.66 0.969949
Target:  5'- gUCGGccuAGGCCcGGGGAGugGagGGGGa -3'
miRNA:   3'- -GGCC---UCCGGcUUCUUCugCaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 14846 0.7 0.835505
Target:  5'- cCCGG-GGCCGcGGGAGGCc--GAGGg -3'
miRNA:   3'- -GGCCuCCGGCuUCUUCUGcaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 15914 0.67 0.939752
Target:  5'- uCCGGcGGCCGGacccgAGGAGGCGccugggcGAGGc -3'
miRNA:   3'- -GGCCuCCGGCU-----UCUUCUGCaa-----CUCCa -5'
29056 5' -54.2 NC_006146.1 + 16063 0.66 0.969949
Target:  5'- gUCGGccuAGGCCcGGGGAGugGagGGGGa -3'
miRNA:   3'- -GGCC---UCCGGcUUCUUCugCaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 18853 0.68 0.913406
Target:  5'- cCCGGGcgcuGCCGggGugguGGACGUgcgGGGGc -3'
miRNA:   3'- -GGCCUc---CGGCuuCu---UCUGCAa--CUCCa -5'
29056 5' -54.2 NC_006146.1 + 18991 0.67 0.939752
Target:  5'- uCCGGcGGCCGGacccgAGGAGGCGccugggcGAGGc -3'
miRNA:   3'- -GGCCuCCGGCU-----UCUUCUGCaa-----CUCCa -5'
29056 5' -54.2 NC_006146.1 + 19141 0.66 0.969949
Target:  5'- gUCGGccuAGGCCcGGGGAGugGagGGGGa -3'
miRNA:   3'- -GGCC---UCCGGcUUCUUCugCaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 20135 0.67 0.948647
Target:  5'- gCUGGGGGCCaaaaAGGAGGACGUgcacuacaAGGa -3'
miRNA:   3'- -GGCCUCCGGc---UUCUUCUGCAac------UCCa -5'
29056 5' -54.2 NC_006146.1 + 21121 0.66 0.975379
Target:  5'- cCUGGAGGCCGA-GAAGACc------- -3'
miRNA:   3'- -GGCCUCCGGCUuCUUCUGcaacucca -5'
29056 5' -54.2 NC_006146.1 + 22069 0.67 0.939752
Target:  5'- uCCGGcGGCCGGacccgAGGAGGCGccugggcGAGGc -3'
miRNA:   3'- -GGCCuCCGGCU-----UCUUCUGCaa-----CUCCa -5'
29056 5' -54.2 NC_006146.1 + 22219 0.66 0.969949
Target:  5'- gUCGGccuAGGCCcGGGGAGugGagGGGGa -3'
miRNA:   3'- -GGCC---UCCGGcUUCUUCugCaaCUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.