miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29056 5' -54.2 NC_006146.1 + 93634 1.1 0.004714
Target:  5'- cCCGGAGGCCGAAGAAGACGUUGAGGUg -3'
miRNA:   3'- -GGCCUCCGGCUUCUUCUGCAACUCCA- -5'
29056 5' -54.2 NC_006146.1 + 167608 0.71 0.810087
Target:  5'- cCUGGGGGCCuc-GggGGCGgaGGGGg -3'
miRNA:   3'- -GGCCUCCGGcuuCuuCUGCaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 169472 0.71 0.810087
Target:  5'- cCUGGGGGCCuc-GggGGCGgaGGGGg -3'
miRNA:   3'- -GGCCUCCGGcuuCuuCUGCaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 68310 0.66 0.975379
Target:  5'- gCGGAagcccuccucgGGCCGcGAGAGGAUGgcgucGAGGa -3'
miRNA:   3'- gGCCU-----------CCGGC-UUCUUCUGCaa---CUCCa -5'
29056 5' -54.2 NC_006146.1 + 168308 0.73 0.71631
Target:  5'- gCCGGGGGCUGAGGggGcucccGAGGg -3'
miRNA:   3'- -GGCCUCCGGCUUCuuCugcaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 169240 0.73 0.71631
Target:  5'- gCCGGGGGCUGAGGggGcucccGAGGg -3'
miRNA:   3'- -GGCCUCCGGCUUCuuCugcaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 93705 0.73 0.726156
Target:  5'- uCCaGGAGGCCGu-GGAGACGaggcucaucgGAGGUg -3'
miRNA:   3'- -GG-CCUCCGGCuuCUUCUGCaa--------CUCCA- -5'
29056 5' -54.2 NC_006146.1 + 19 0.72 0.735922
Target:  5'- -gGGGGGuuGAGGGgccgggauGGAUGUUGGGGg -3'
miRNA:   3'- ggCCUCCggCUUCU--------UCUGCAACUCCa -5'
29056 5' -54.2 NC_006146.1 + 137983 0.72 0.745599
Target:  5'- cCCGGGGGcCCGgcGggGugG--GGGGUg -3'
miRNA:   3'- -GGCCUCC-GGCuuCuuCugCaaCUCCA- -5'
29056 5' -54.2 NC_006146.1 + 166884 0.71 0.808339
Target:  5'- gCGGAGGgCGAGGAGGAgCGUgagugaaaaacaGAGGa -3'
miRNA:   3'- gGCCUCCgGCUUCUUCU-GCAa-----------CUCCa -5'
29056 5' -54.2 NC_006146.1 + 90610 0.72 0.774006
Target:  5'- uCUGGuGGCCGAGGcAGugGUaaaaaggGAGGg -3'
miRNA:   3'- -GGCCuCCGGCUUCuUCugCAa------CUCCa -5'
29056 5' -54.2 NC_006146.1 + 93920 0.72 0.745599
Target:  5'- aCGGAGGCguaGAAGgcGGCGgcGGGGc -3'
miRNA:   3'- gGCCUCCGg--CUUCuuCUGCaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 71390 0.78 0.458754
Target:  5'- gCUGGuGGCCGAGGgcGACGUUGcauuuugggcAGGUa -3'
miRNA:   3'- -GGCCuCCGGCUUCuuCUGCAAC----------UCCA- -5'
29056 5' -54.2 NC_006146.1 + 39652 0.71 0.792332
Target:  5'- cCCGugauGAGGCUGGAGAuccaggcucuggGGGCGUUGAGa- -3'
miRNA:   3'- -GGC----CUCCGGCUUCU------------UCUGCAACUCca -5'
29056 5' -54.2 NC_006146.1 + 53340 0.73 0.676303
Target:  5'- cCCGGcGGCCGcGGGgcGGCG-UGAGGUc -3'
miRNA:   3'- -GGCCuCCGGC-UUCuuCUGCaACUCCA- -5'
29056 5' -54.2 NC_006146.1 + 12835 0.72 0.745599
Target:  5'- uCCGGcGGCCGGacccgAGGAGGCGccUGGGGc -3'
miRNA:   3'- -GGCCuCCGGCU-----UCUUCUGCa-ACUCCa -5'
29056 5' -54.2 NC_006146.1 + 90234 0.71 0.801285
Target:  5'- -aGGAGgcaGCCGAGGGAGAgGccGAGGUa -3'
miRNA:   3'- ggCCUC---CGGCUUCUUCUgCaaCUCCA- -5'
29056 5' -54.2 NC_006146.1 + 168540 0.71 0.810087
Target:  5'- cCUGGGGGCCuc-GggGGCGgaGGGGg -3'
miRNA:   3'- -GGCCUCCGGcuuCuuCUGCaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 167376 0.73 0.71631
Target:  5'- gCCGGGGGCUGAGGggGcucccGAGGg -3'
miRNA:   3'- -GGCCUCCGGCUUCuuCugcaaCUCCa -5'
29056 5' -54.2 NC_006146.1 + 170171 0.73 0.71631
Target:  5'- gCCGGGGGCUGAGGggGcucccGAGGg -3'
miRNA:   3'- -GGCCUCCGGCUUCuuCugcaaCUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.