miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29057 3' -62.7 NC_006146.1 + 32977 0.66 0.656761
Target:  5'- cGCGCUGGgucGCg---GCU-GCCCCCGg -3'
miRNA:   3'- -UGCGACCa--CGagaaCGGcCGGGGGCg -5'
29057 3' -62.7 NC_006146.1 + 115518 0.66 0.656761
Target:  5'- gAUGCUGGc-CUCggUGCCccgGGCgUCCCGCg -3'
miRNA:   3'- -UGCGACCacGAGa-ACGG---CCG-GGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 114376 0.66 0.656761
Target:  5'- gACGCgucaGCUgCUgaugGCCGGCgacgaCCCCGCg -3'
miRNA:   3'- -UGCGaccaCGA-GAa---CGGCCG-----GGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 145684 0.66 0.656761
Target:  5'- uCGCUGGUGUUCaaauu-GUCCCCGCc -3'
miRNA:   3'- uGCGACCACGAGaacggcCGGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 47035 0.66 0.656761
Target:  5'- gGCGCccugGGUGCgagaagggGCCGGUCgCCGg -3'
miRNA:   3'- -UGCGa---CCACGagaa----CGGCCGGgGGCg -5'
29057 3' -62.7 NC_006146.1 + 62564 0.66 0.656761
Target:  5'- uCGuCUGGUGCUUugucuUUGCCaaccuGCUCUCGCu -3'
miRNA:   3'- uGC-GACCACGAG-----AACGGc----CGGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 158643 0.66 0.647012
Target:  5'- -aGCgGG-GCUCaucGuCCGGCCUCUGCg -3'
miRNA:   3'- ugCGaCCaCGAGaa-C-GGCCGGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 106686 0.66 0.647012
Target:  5'- gGCGCagauGUGcCUCcUGCCGGagCUCCGCg -3'
miRNA:   3'- -UGCGac--CAC-GAGaACGGCCg-GGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 113630 0.66 0.647012
Target:  5'- gGCGCUGGaUGU---UGUCucGCCCCCGUu -3'
miRNA:   3'- -UGCGACC-ACGagaACGGc-CGGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 136808 0.66 0.647012
Target:  5'- cGCGCUGGgucGCggcUGCCccccgGGaCCCCCGg -3'
miRNA:   3'- -UGCGACCa--CGagaACGG-----CC-GGGGGCg -5'
29057 3' -62.7 NC_006146.1 + 1109 0.66 0.637253
Target:  5'- -gGCUGGgucggagaagGgUCUUcuccacgcGCCGguGCCCCCGCg -3'
miRNA:   3'- ugCGACCa---------CgAGAA--------CGGC--CGGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 2041 0.66 0.637253
Target:  5'- -gGCUGGgucggagaagGgUCUUcuccacgcGCCGguGCCCCCGCg -3'
miRNA:   3'- ugCGACCa---------CgAGAA--------CGGC--CGGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 111010 0.66 0.627489
Target:  5'- -gGUUGGccaGCg--UGCUGGCCCgCGCg -3'
miRNA:   3'- ugCGACCa--CGagaACGGCCGGGgGCG- -5'
29057 3' -62.7 NC_006146.1 + 116084 0.66 0.627489
Target:  5'- gACGUccUGGUGCauggUGgCGGCCaCCCGa -3'
miRNA:   3'- -UGCG--ACCACGaga-ACgGCCGG-GGGCg -5'
29057 3' -62.7 NC_006146.1 + 101321 0.66 0.617729
Target:  5'- gACGgaGGUGUg---GCUGGCCUCCu- -3'
miRNA:   3'- -UGCgaCCACGagaaCGGCCGGGGGcg -5'
29057 3' -62.7 NC_006146.1 + 52836 0.66 0.607979
Target:  5'- uGCGgaGG-GC-CgaGCCGccgccGCCCCCGCc -3'
miRNA:   3'- -UGCgaCCaCGaGaaCGGC-----CGGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 166016 0.66 0.607979
Target:  5'- cAUGCgguugUGG-GCaUCgggggUGCCuguGGCCCCCGCc -3'
miRNA:   3'- -UGCG-----ACCaCG-AGa----ACGG---CCGGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 205 0.66 0.598245
Target:  5'- cGCGCcGGUGCcCccGCgaCGGUCCCCGg -3'
miRNA:   3'- -UGCGaCCACGaGaaCG--GCCGGGGGCg -5'
29057 3' -62.7 NC_006146.1 + 15896 0.66 0.598245
Target:  5'- uCGCUGGccucgaGCcagcaacuUCUgUGCCGGgCCCUGCg -3'
miRNA:   3'- uGCGACCa-----CG--------AGA-ACGGCCgGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 48229 0.66 0.598245
Target:  5'- gGCGCgccugGGUGagc--GCCgcgcggagGGCCCCCGCc -3'
miRNA:   3'- -UGCGa----CCACgagaaCGG--------CCGGGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.