Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29057 | 3' | -62.7 | NC_006146.1 | + | 32977 | 0.66 | 0.656761 |
Target: 5'- cGCGCUGGgucGCg---GCU-GCCCCCGg -3' miRNA: 3'- -UGCGACCa--CGagaaCGGcCGGGGGCg -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 62564 | 0.66 | 0.656761 |
Target: 5'- uCGuCUGGUGCUUugucuUUGCCaaccuGCUCUCGCu -3' miRNA: 3'- uGC-GACCACGAG-----AACGGc----CGGGGGCG- -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 47035 | 0.66 | 0.656761 |
Target: 5'- gGCGCccugGGUGCgagaagggGCCGGUCgCCGg -3' miRNA: 3'- -UGCGa---CCACGagaa----CGGCCGGgGGCg -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 145684 | 0.66 | 0.656761 |
Target: 5'- uCGCUGGUGUUCaaauu-GUCCCCGCc -3' miRNA: 3'- uGCGACCACGAGaacggcCGGGGGCG- -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 52836 | 0.66 | 0.607979 |
Target: 5'- uGCGgaGG-GC-CgaGCCGccgccGCCCCCGCc -3' miRNA: 3'- -UGCgaCCaCGaGaaCGGC-----CGGGGGCG- -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 166016 | 0.66 | 0.607979 |
Target: 5'- cAUGCgguugUGG-GCaUCgggggUGCCuguGGCCCCCGCc -3' miRNA: 3'- -UGCG-----ACCaCG-AGa----ACGG---CCGGGGGCG- -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 116084 | 0.66 | 0.627489 |
Target: 5'- gACGUccUGGUGCauggUGgCGGCCaCCCGa -3' miRNA: 3'- -UGCG--ACCACGaga-ACgGCCGG-GGGCg -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 113630 | 0.66 | 0.647012 |
Target: 5'- gGCGCUGGaUGU---UGUCucGCCCCCGUu -3' miRNA: 3'- -UGCGACC-ACGagaACGGc-CGGGGGCG- -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 101321 | 0.66 | 0.617729 |
Target: 5'- gACGgaGGUGUg---GCUGGCCUCCu- -3' miRNA: 3'- -UGCgaCCACGagaaCGGCCGGGGGcg -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 106686 | 0.66 | 0.647012 |
Target: 5'- gGCGCagauGUGcCUCcUGCCGGagCUCCGCg -3' miRNA: 3'- -UGCGac--CAC-GAGaACGGCCg-GGGGCG- -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 158643 | 0.66 | 0.647012 |
Target: 5'- -aGCgGG-GCUCaucGuCCGGCCUCUGCg -3' miRNA: 3'- ugCGaCCaCGAGaa-C-GGCCGGGGGCG- -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 115518 | 0.66 | 0.656761 |
Target: 5'- gAUGCUGGc-CUCggUGCCccgGGCgUCCCGCg -3' miRNA: 3'- -UGCGACCacGAGa-ACGG---CCG-GGGGCG- -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 114376 | 0.66 | 0.656761 |
Target: 5'- gACGCgucaGCUgCUgaugGCCGGCgacgaCCCCGCg -3' miRNA: 3'- -UGCGaccaCGA-GAa---CGGCCG-----GGGGCG- -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 136808 | 0.66 | 0.647012 |
Target: 5'- cGCGCUGGgucGCggcUGCCccccgGGaCCCCCGg -3' miRNA: 3'- -UGCGACCa--CGagaACGG-----CC-GGGGGCg -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 2041 | 0.66 | 0.637253 |
Target: 5'- -gGCUGGgucggagaagGgUCUUcuccacgcGCCGguGCCCCCGCg -3' miRNA: 3'- ugCGACCa---------CgAGAA--------CGGC--CGGGGGCG- -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 1109 | 0.66 | 0.637253 |
Target: 5'- -gGCUGGgucggagaagGgUCUUcuccacgcGCCGguGCCCCCGCg -3' miRNA: 3'- ugCGACCa---------CgAGAA--------CGGC--CGGGGGCG- -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 111010 | 0.66 | 0.627489 |
Target: 5'- -gGUUGGccaGCg--UGCUGGCCCgCGCg -3' miRNA: 3'- ugCGACCa--CGagaACGGCCGGGgGCG- -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 205 | 0.66 | 0.598245 |
Target: 5'- cGCGCcGGUGCcCccGCgaCGGUCCCCGg -3' miRNA: 3'- -UGCGaCCACGaGaaCG--GCCGGGGGCg -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 15896 | 0.66 | 0.598245 |
Target: 5'- uCGCUGGccucgaGCcagcaacuUCUgUGCCGGgCCCUGCg -3' miRNA: 3'- uGCGACCa-----CG--------AGA-ACGGCCgGGGGCG- -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 48229 | 0.66 | 0.598245 |
Target: 5'- gGCGCgccugGGUGagc--GCCgcgcggagGGCCCCCGCc -3' miRNA: 3'- -UGCGa----CCACgagaaCGG--------CCGGGGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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