miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29057 3' -62.7 NC_006146.1 + 95406 1.09 0.000763
Target:  5'- cACGCUGGUGCUCUUGCCGGCCCCCGCc -3'
miRNA:   3'- -UGCGACCACGAGAACGGCCGGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 76864 0.75 0.190905
Target:  5'- uACGCggcGGcGCUCgggGCCGuGCCCCUGCc -3'
miRNA:   3'- -UGCGa--CCaCGAGaa-CGGC-CGGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 55705 0.75 0.204986
Target:  5'- cCGCcGGgggGCUCUgcccgccGCUGGCCUCCGCg -3'
miRNA:   3'- uGCGaCCa--CGAGAa------CGGCCGGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 70170 0.75 0.209876
Target:  5'- gGCGCUGGUGgCcggCgagGCCGGucccacacccaCCCCCGCa -3'
miRNA:   3'- -UGCGACCAC-Ga--Gaa-CGGCC-----------GGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 71722 0.74 0.219958
Target:  5'- gACGCcaccUGGUgGCUCUacgaGCUGGCCCuCCGCc -3'
miRNA:   3'- -UGCG----ACCA-CGAGAa---CGGCCGGG-GGCG- -5'
29057 3' -62.7 NC_006146.1 + 128208 0.74 0.23045
Target:  5'- gGCGCUGGgggGCUCUgccaGCCucaggcaGCCCaCCGCg -3'
miRNA:   3'- -UGCGACCa--CGAGAa---CGGc------CGGG-GGCG- -5'
29057 3' -62.7 NC_006146.1 + 70614 0.74 0.235853
Target:  5'- uCGC-GGUGCaggCcUGCCaGCCCCCGCu -3'
miRNA:   3'- uGCGaCCACGa--GaACGGcCGGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 72566 0.73 0.28296
Target:  5'- gGCGCcggcgUGGUGCUggggCUUGCCGGgguuagaaCCCCgGCa -3'
miRNA:   3'- -UGCG-----ACCACGA----GAACGGCC--------GGGGgCG- -5'
29057 3' -62.7 NC_006146.1 + 165252 0.72 0.289347
Target:  5'- -gGCUGGUGCUCgucccCCuGuCCCCCGCc -3'
miRNA:   3'- ugCGACCACGAGaac--GGcC-GGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 50897 0.72 0.289347
Target:  5'- gGCGCgGGUGCg---GCCugGGCCUCCGUg -3'
miRNA:   3'- -UGCGaCCACGagaaCGG--CCGGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 44692 0.71 0.330037
Target:  5'- gAUGCcGGUGUggcggCggugGCCguGGCCCCCGCu -3'
miRNA:   3'- -UGCGaCCACGa----Gaa--CGG--CCGGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 49395 0.71 0.336493
Target:  5'- cGCGCaggcggauguaggUGGgGUUCUUGgCGGCCCCCa- -3'
miRNA:   3'- -UGCG-------------ACCaCGAGAACgGCCGGGGGcg -5'
29057 3' -62.7 NC_006146.1 + 158988 0.71 0.351911
Target:  5'- cCGCaaagaccaGGUGCUCcaccgcguagUUGCCGGgCCCCGUu -3'
miRNA:   3'- uGCGa-------CCACGAG----------AACGGCCgGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 152020 0.71 0.359427
Target:  5'- -gGCUGGU-CUCgcuUGCUGGCCCcaauggCCGCg -3'
miRNA:   3'- ugCGACCAcGAGa--ACGGCCGGG------GGCG- -5'
29057 3' -62.7 NC_006146.1 + 167519 0.71 0.359427
Target:  5'- -gGCUGGcGC-CggGCCGcGCCCCCGg -3'
miRNA:   3'- ugCGACCaCGaGaaCGGC-CGGGGGCg -5'
29057 3' -62.7 NC_006146.1 + 142786 0.71 0.359427
Target:  5'- -gGCUGGU-CUCgcuUGCUGGCCCcaauggCCGCg -3'
miRNA:   3'- ugCGACCAcGAGa--ACGGCCGGG------GGCG- -5'
29057 3' -62.7 NC_006146.1 + 145864 0.71 0.359427
Target:  5'- -gGCUGGU-CUCgcuUGCUGGCCCcaauggCCGCg -3'
miRNA:   3'- ugCGACCAcGAGa--ACGGCCGGG------GGCG- -5'
29057 3' -62.7 NC_006146.1 + 155098 0.71 0.359427
Target:  5'- -gGCUGGU-CUCgcuUGCUGGCCCcaauggCCGCg -3'
miRNA:   3'- ugCGACCAcGAGa--ACGGCCGGG------GGCG- -5'
29057 3' -62.7 NC_006146.1 + 158177 0.71 0.359427
Target:  5'- -gGCUGGU-CUCgcuUGCUGGCCCcaauggCCGCg -3'
miRNA:   3'- ugCGACCAcGAGa--ACGGCCGGG------GGCG- -5'
29057 3' -62.7 NC_006146.1 + 148942 0.71 0.359427
Target:  5'- -gGCUGGU-CUCgcuUGCUGGCCCcaauggCCGCg -3'
miRNA:   3'- ugCGACCAcGAGa--ACGGCCGGG------GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.