miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29057 3' -62.7 NC_006146.1 + 114346 0.67 0.588534
Target:  5'- gACGgaGGUGgaCggggGCCuGGCCCgCGUg -3'
miRNA:   3'- -UGCgaCCACgaGaa--CGG-CCGGGgGCG- -5'
29057 3' -62.7 NC_006146.1 + 142223 0.67 0.579818
Target:  5'- gACGcCUGGaggcggacccgagggGCUCUggggcGCCGGUCCCCu- -3'
miRNA:   3'- -UGC-GACCa--------------CGAGAa----CGGCCGGGGGcg -5'
29057 3' -62.7 NC_006146.1 + 157613 0.67 0.579818
Target:  5'- gACGcCUGGaggcggacccgagggGCUCUggggcGCCGGUCCCCu- -3'
miRNA:   3'- -UGC-GACCa--------------CGAGAa----CGGCCGGGGGcg -5'
29057 3' -62.7 NC_006146.1 + 154535 0.67 0.579818
Target:  5'- gACGcCUGGaggcggacccgagggGCUCUggggcGCCGGUCCCCu- -3'
miRNA:   3'- -UGC-GACCa--------------CGAGAa----CGGCCGGGGGcg -5'
29057 3' -62.7 NC_006146.1 + 151457 0.67 0.579818
Target:  5'- gACGcCUGGaggcggacccgagggGCUCUggggcGCCGGUCCCCu- -3'
miRNA:   3'- -UGC-GACCa--------------CGAGAa----CGGCCGGGGGcg -5'
29057 3' -62.7 NC_006146.1 + 148379 0.67 0.579818
Target:  5'- gACGcCUGGaggcggacccgagggGCUCUggggcGCCGGUCCCCu- -3'
miRNA:   3'- -UGC-GACCa--------------CGAGAa----CGGCCGGGGGcg -5'
29057 3' -62.7 NC_006146.1 + 145301 0.67 0.579818
Target:  5'- gACGcCUGGaggcggacccgagggGCUCUggggcGCCGGUCCCCu- -3'
miRNA:   3'- -UGC-GACCa--------------CGAGAa----CGGCCGGGGGcg -5'
29057 3' -62.7 NC_006146.1 + 123355 0.67 0.569204
Target:  5'- uCGCcgagGGaGCUCUggcgcugGCCGGgggCCCCGCa -3'
miRNA:   3'- uGCGa---CCaCGAGAa------CGGCCg--GGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 28310 0.67 0.559597
Target:  5'- aGC-CUGGUGcCUCUggagGCCcuGG-CCCCGCc -3'
miRNA:   3'- -UGcGACCAC-GAGAa---CGG--CCgGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 12921 0.67 0.559597
Target:  5'- aGC-CUGGUGcCUCUggagGCCcuGG-CCCCGCc -3'
miRNA:   3'- -UGcGACCAC-GAGAa---CGG--CCgGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 19076 0.67 0.559597
Target:  5'- aGC-CUGGUGcCUCUggagGCCcuGG-CCCCGCc -3'
miRNA:   3'- -UGcGACCAC-GAGAa---CGG--CCgGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 25232 0.67 0.559597
Target:  5'- aGC-CUGGUGcCUCUggagGCCcuGG-CCCCGCc -3'
miRNA:   3'- -UGcGACCAC-GAGAa---CGG--CCgGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 22154 0.67 0.559597
Target:  5'- aGC-CUGGUGcCUCUggagGCCcuGG-CCCCGCc -3'
miRNA:   3'- -UGcGACCAC-GAGAa---CGG--CCgGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 48561 0.67 0.559597
Target:  5'- -aGCcaUGGUGCUga-GCuCGGCCCCCugGCa -3'
miRNA:   3'- ugCG--ACCACGAgaaCG-GCCGGGGG--CG- -5'
29057 3' -62.7 NC_006146.1 + 63121 0.67 0.559597
Target:  5'- uGCGCaGGUGCccCUgggaccUGCUGGCCaucuCCGCc -3'
miRNA:   3'- -UGCGaCCACGa-GA------ACGGCCGGg---GGCG- -5'
29057 3' -62.7 NC_006146.1 + 15998 0.67 0.559597
Target:  5'- aGC-CUGGUGcCUCUggagGCCcuGG-CCCCGCc -3'
miRNA:   3'- -UGcGACCAC-GAGAa---CGG--CCgGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 118798 0.67 0.550035
Target:  5'- aGCGacgGGgaacagaugGC-CUcGCCGGCCCCCGa -3'
miRNA:   3'- -UGCga-CCa--------CGaGAaCGGCCGGGGGCg -5'
29057 3' -62.7 NC_006146.1 + 4903 0.67 0.550035
Target:  5'- cCGcCUGGUGacagaGCCGGaCCCUCGCu -3'
miRNA:   3'- uGC-GACCACgagaaCGGCC-GGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 111110 0.67 0.537683
Target:  5'- -aGCUGGaGCUC-UGCCGGgucgacacccucaaCCCCCa- -3'
miRNA:   3'- ugCGACCaCGAGaACGGCC--------------GGGGGcg -5'
29057 3' -62.7 NC_006146.1 + 114686 0.68 0.534845
Target:  5'- cCGCUGGacgGCUCgcgGCUcguccgcgagacccgGGCCCUgGCg -3'
miRNA:   3'- uGCGACCa--CGAGaa-CGG---------------CCGGGGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.