miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29057 3' -62.7 NC_006146.1 + 205 0.66 0.598245
Target:  5'- cGCGCcGGUGCcCccGCgaCGGUCCCCGg -3'
miRNA:   3'- -UGCGaCCACGaGaaCG--GCCGGGGGCg -5'
29057 3' -62.7 NC_006146.1 + 1109 0.66 0.637253
Target:  5'- -gGCUGGgucggagaagGgUCUUcuccacgcGCCGguGCCCCCGCg -3'
miRNA:   3'- ugCGACCa---------CgAGAA--------CGGC--CGGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 2041 0.66 0.637253
Target:  5'- -gGCUGGgucggagaagGgUCUUcuccacgcGCCGguGCCCCCGCg -3'
miRNA:   3'- ugCGACCa---------CgAGAA--------CGGC--CGGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 4903 0.67 0.550035
Target:  5'- cCGcCUGGUGacagaGCCGGaCCCUCGCu -3'
miRNA:   3'- uGC-GACCACgagaaCGGCC-GGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 5216 0.68 0.503089
Target:  5'- -aGCUaggGGUGCaggucCUUGCCGGCCUCgGg -3'
miRNA:   3'- ugCGA---CCACGa----GAACGGCCGGGGgCg -5'
29057 3' -62.7 NC_006146.1 + 12921 0.67 0.559597
Target:  5'- aGC-CUGGUGcCUCUggagGCCcuGG-CCCCGCc -3'
miRNA:   3'- -UGcGACCAC-GAGAa---CGG--CCgGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 15896 0.66 0.598245
Target:  5'- uCGCUGGccucgaGCcagcaacuUCUgUGCCGGgCCCUGCg -3'
miRNA:   3'- uGCGACCa-----CG--------AGA-ACGGCCgGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 15998 0.67 0.559597
Target:  5'- aGC-CUGGUGcCUCUggagGCCcuGG-CCCCGCc -3'
miRNA:   3'- -UGcGACCAC-GAGAa---CGG--CCgGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 19076 0.67 0.559597
Target:  5'- aGC-CUGGUGcCUCUggagGCCcuGG-CCCCGCc -3'
miRNA:   3'- -UGcGACCAC-GAGAa---CGG--CCgGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 22154 0.67 0.559597
Target:  5'- aGC-CUGGUGcCUCUggagGCCcuGG-CCCCGCc -3'
miRNA:   3'- -UGcGACCAC-GAGAa---CGG--CCgGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 25232 0.67 0.559597
Target:  5'- aGC-CUGGUGcCUCUggagGCCcuGG-CCCCGCc -3'
miRNA:   3'- -UGcGACCAC-GAGAa---CGG--CCgGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 28310 0.67 0.559597
Target:  5'- aGC-CUGGUGcCUCUggagGCCcuGG-CCCCGCc -3'
miRNA:   3'- -UGcGACCAC-GAGAa---CGG--CCgGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 32907 0.69 0.460617
Target:  5'- -gGCUGGggGCgcaccccccaccccGCCGGCCCCCGg -3'
miRNA:   3'- ugCGACCa-CGagaa----------CGGCCGGGGGCg -5'
29057 3' -62.7 NC_006146.1 + 32977 0.66 0.656761
Target:  5'- cGCGCUGGgucGCg---GCU-GCCCCCGg -3'
miRNA:   3'- -UGCGACCa--CGagaaCGGcCGGGGGCg -5'
29057 3' -62.7 NC_006146.1 + 40979 0.68 0.503089
Target:  5'- cCGCcgUGGUGC-CgcGCCGGCgCCCCa- -3'
miRNA:   3'- uGCG--ACCACGaGaaCGGCCG-GGGGcg -5'
29057 3' -62.7 NC_006146.1 + 44692 0.71 0.330037
Target:  5'- gAUGCcGGUGUggcggCggugGCCguGGCCCCCGCu -3'
miRNA:   3'- -UGCGaCCACGa----Gaa--CGG--CCGGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 47035 0.66 0.656761
Target:  5'- gGCGCccugGGUGCgagaagggGCCGGUCgCCGg -3'
miRNA:   3'- -UGCGa---CCACGagaa----CGGCCGGgGGCg -5'
29057 3' -62.7 NC_006146.1 + 48229 0.66 0.598245
Target:  5'- gGCGCgccugGGUGagc--GCCgcgcggagGGCCCCCGCc -3'
miRNA:   3'- -UGCGa----CCACgagaaCGG--------CCGGGGGCG- -5'
29057 3' -62.7 NC_006146.1 + 48561 0.67 0.559597
Target:  5'- -aGCcaUGGUGCUga-GCuCGGCCCCCugGCa -3'
miRNA:   3'- ugCG--ACCACGAgaaCG-GCCGGGGG--CG- -5'
29057 3' -62.7 NC_006146.1 + 49395 0.71 0.336493
Target:  5'- cGCGCaggcggauguaggUGGgGUUCUUGgCGGCCCCCa- -3'
miRNA:   3'- -UGCG-------------ACCaCGAGAACgGCCGGGGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.