Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29057 | 3' | -62.7 | NC_006146.1 | + | 95406 | 1.09 | 0.000763 |
Target: 5'- cACGCUGGUGCUCUUGCCGGCCCCCGCc -3' miRNA: 3'- -UGCGACCACGAGAACGGCCGGGGGCG- -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 65026 | 0.69 | 0.475767 |
Target: 5'- gGCGCUGGccGCuaUCUUGCCu-CCCCgGCu -3' miRNA: 3'- -UGCGACCa-CG--AGAACGGccGGGGgCG- -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 5216 | 0.68 | 0.503089 |
Target: 5'- -aGCUaggGGUGCaggucCUUGCCGGCCUCgGg -3' miRNA: 3'- ugCGA---CCACGa----GAACGGCCGGGGgCg -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 145684 | 0.66 | 0.656761 |
Target: 5'- uCGCUGGUGUUCaaauu-GUCCCCGCc -3' miRNA: 3'- uGCGACCACGAGaacggcCGGGGGCG- -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 165252 | 0.72 | 0.289347 |
Target: 5'- -gGCUGGUGCUCgucccCCuGuCCCCCGCc -3' miRNA: 3'- ugCGACCACGAGaac--GGcC-GGGGGCG- -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 44692 | 0.71 | 0.330037 |
Target: 5'- gAUGCcGGUGUggcggCggugGCCguGGCCCCCGCu -3' miRNA: 3'- -UGCGaCCACGa----Gaa--CGG--CCGGGGGCG- -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 158988 | 0.71 | 0.351911 |
Target: 5'- cCGCaaagaccaGGUGCUCcaccgcguagUUGCCGGgCCCCGUu -3' miRNA: 3'- uGCGa-------CCACGAG----------AACGGCCgGGGGCG- -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 167519 | 0.71 | 0.359427 |
Target: 5'- -gGCUGGcGC-CggGCCGcGCCCCCGg -3' miRNA: 3'- ugCGACCaCGaGaaCGGC-CGGGGGCg -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 170314 | 0.71 | 0.359427 |
Target: 5'- -gGCUGGcGC-CggGCCGcGCCCCCGg -3' miRNA: 3'- ugCGACCaCGaGaaCGGC-CGGGGGCg -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 98701 | 0.69 | 0.466825 |
Target: 5'- cCGCUGGU-CUCccGCCcauccGGCCgCCGCg -3' miRNA: 3'- uGCGACCAcGAGaaCGG-----CCGGgGGCG- -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 56870 | 0.7 | 0.406832 |
Target: 5'- -gGCUGGgGC---UGgCGGCCCCCGUg -3' miRNA: 3'- ugCGACCaCGagaACgGCCGGGGGCG- -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 169383 | 0.71 | 0.359427 |
Target: 5'- -gGCUGGcGC-CggGCCGcGCCCCCGg -3' miRNA: 3'- ugCGACCaCGaGaaCGGC-CGGGGGCg -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 55705 | 0.75 | 0.204986 |
Target: 5'- cCGCcGGgggGCUCUgcccgccGCUGGCCUCCGCg -3' miRNA: 3'- uGCGaCCa--CGAGAa------CGGCCGGGGGCG- -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 147110 | 0.7 | 0.415106 |
Target: 5'- -aGCUGGgGCUCa-GCgGGCCCCagaCGCg -3' miRNA: 3'- ugCGACCaCGAGaaCGgCCGGGG---GCG- -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 70170 | 0.75 | 0.209876 |
Target: 5'- gGCGCUGGUGgCcggCgagGCCGGucccacacccaCCCCCGCa -3' miRNA: 3'- -UGCGACCAC-Ga--Gaa-CGGCC-----------GGGGGCG- -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 168451 | 0.71 | 0.359427 |
Target: 5'- -gGCUGGcGC-CggGCCGcGCCCCCGg -3' miRNA: 3'- ugCGACCaCGaGaaCGGC-CGGGGGCg -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 156858 | 0.69 | 0.431959 |
Target: 5'- -aGCcGGcGCUUgcGCCuGCCCCCGCc -3' miRNA: 3'- ugCGaCCaCGAGaaCGGcCGGGGGCG- -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 109563 | 0.68 | 0.484795 |
Target: 5'- cACGCUGGUGaaggUGCCucgccggcuaGGCCaCCCGg -3' miRNA: 3'- -UGCGACCACgagaACGG----------CCGG-GGGCg -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 72566 | 0.73 | 0.28296 |
Target: 5'- gGCGCcggcgUGGUGCUggggCUUGCCGGgguuagaaCCCCgGCa -3' miRNA: 3'- -UGCG-----ACCACGA----GAACGGCC--------GGGGgCG- -5' |
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29057 | 3' | -62.7 | NC_006146.1 | + | 49395 | 0.71 | 0.336493 |
Target: 5'- cGCGCaggcggauguaggUGGgGUUCUUGgCGGCCCCCa- -3' miRNA: 3'- -UGCG-------------ACCaCGAGAACgGCCGGGGGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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